Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF271 and GFF272 are separated by 17 nucleotides GFF272 and GFF273 overlap by 4 nucleotides
GFF271 - amidohydrolase 2, at 284,131 to 285,051
GFF271
GFF272 - 4,5-dihydroxyphthalate decarboxylase (EC 4.1.1.55), at 285,069 to 285,995
GFF272
GFF273 - Tricarboxylate transport protein TctC, at 285,992 to 286,954
GFF273
Position (kb) 285
286 Strain fitness (log2 ratio) -1
0
1
2 at 284.081 kb on + strand at 284.081 kb on + strand at 284.093 kb on - strand at 284.098 kb on + strand at 284.297 kb on - strand, within GFF271 at 284.297 kb on - strand, within GFF271 at 284.297 kb on - strand, within GFF271 at 284.368 kb on + strand, within GFF271 at 284.386 kb on + strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.587 kb on + strand, within GFF271 at 284.588 kb on - strand, within GFF271 at 284.732 kb on - strand, within GFF271 at 284.732 kb on - strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 285.102 kb on + strand at 285.102 kb on + strand at 285.103 kb on - strand at 285.336 kb on + strand, within GFF272 at 285.336 kb on + strand, within GFF272 at 285.336 kb on + strand, within GFF272 at 285.573 kb on + strand, within GFF272 at 285.574 kb on - strand, within GFF272 at 286.136 kb on + strand, within GFF273 at 286.136 kb on + strand, within GFF273 at 286.136 kb on + strand, within GFF273 at 286.308 kb on - strand, within GFF273 at 286.308 kb on - strand, within GFF273 at 286.308 kb on - strand, within GFF273 at 286.358 kb on + strand, within GFF273 at 286.358 kb on + strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.359 kb on - strand, within GFF273 at 286.445 kb on + strand, within GFF273 at 286.446 kb on - strand, within GFF273 at 286.446 kb on - strand, within GFF273 at 286.446 kb on - strand, within GFF273 at 286.446 kb on - strand, within GFF273 at 286.490 kb on + strand, within GFF273 at 286.490 kb on + strand, within GFF273 at 286.491 kb on - strand, within GFF273 at 286.491 kb on - strand, within GFF273 at 286.491 kb on - strand, within GFF273 at 286.491 kb on - strand, within GFF273 at 286.491 kb on - strand, within GFF273 at 286.616 kb on + strand, within GFF273 at 286.616 kb on + strand, within GFF273 at 286.616 kb on + strand, within GFF273 at 286.617 kb on - strand, within GFF273 at 286.617 kb on - strand, within GFF273 at 286.718 kb on + strand, within GFF273 at 286.718 kb on + strand, within GFF273 at 286.718 kb on + strand, within GFF273 at 286.718 kb on + strand, within GFF273 at 286.719 kb on - strand, within GFF273 at 286.719 kb on - strand, within GFF273 at 286.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 284,081 + +0.8 284,081 + -0.2 284,093 - -0.3 284,098 + -1.4 284,297 - GFF271 0.18 +0.7 284,297 - GFF271 0.18 -1.5 284,297 - GFF271 0.18 -1.2 284,368 + GFF271 0.26 +2.1 284,386 + GFF271 0.28 -0.2 284,387 - GFF271 0.28 +0.2 284,387 - GFF271 0.28 -0.3 284,387 - GFF271 0.28 -0.4 284,387 - GFF271 0.28 -0.8 284,587 + GFF271 0.50 -0.5 284,588 - GFF271 0.50 +0.0 284,732 - GFF271 0.65 +0.5 284,732 - GFF271 0.65 +0.1 284,788 + GFF271 0.71 +0.3 284,788 + GFF271 0.71 +0.1 284,788 + GFF271 0.71 -0.2 284,789 - GFF271 0.71 +0.7 284,789 - GFF271 0.71 -0.3 284,789 - GFF271 0.71 -0.1 284,789 - GFF271 0.71 -0.2 284,789 - GFF271 0.71 +0.7 285,102 + +0.3 285,102 + +1.6 285,103 - -0.5 285,336 + GFF272 0.29 -0.1 285,336 + GFF272 0.29 -0.4 285,336 + GFF272 0.29 -0.7 285,573 + GFF272 0.54 -0.3 285,574 - GFF272 0.54 +1.1 286,136 + GFF273 0.15 +1.0 286,136 + GFF273 0.15 +0.3 286,136 + GFF273 0.15 -0.7 286,308 - GFF273 0.33 +0.2 286,308 - GFF273 0.33 -0.2 286,308 - GFF273 0.33 +0.2 286,358 + GFF273 0.38 +0.3 286,358 + GFF273 0.38 +0.7 286,359 - GFF273 0.38 +0.3 286,359 - GFF273 0.38 -0.2 286,359 - GFF273 0.38 -0.3 286,359 - GFF273 0.38 -0.4 286,359 - GFF273 0.38 -0.1 286,359 - GFF273 0.38 +1.1 286,359 - GFF273 0.38 -0.5 286,445 + GFF273 0.47 +0.1 286,446 - GFF273 0.47 -0.9 286,446 - GFF273 0.47 -0.6 286,446 - GFF273 0.47 +0.2 286,446 - GFF273 0.47 +0.5 286,490 + GFF273 0.52 -0.3 286,490 + GFF273 0.52 +0.8 286,491 - GFF273 0.52 -0.2 286,491 - GFF273 0.52 -0.4 286,491 - GFF273 0.52 -1.1 286,491 - GFF273 0.52 +0.3 286,491 - GFF273 0.52 -0.5 286,616 + GFF273 0.65 +0.5 286,616 + GFF273 0.65 -1.2 286,616 + GFF273 0.65 +0.5 286,617 - GFF273 0.65 +0.0 286,617 - GFF273 0.65 +0.6 286,718 + GFF273 0.75 -0.3 286,718 + GFF273 0.75 +0.6 286,718 + GFF273 0.75 +0.1 286,718 + GFF273 0.75 +1.0 286,719 - GFF273 0.75 -1.5 286,719 - GFF273 0.75 -0.2 286,983 + -0.3
Or see this region's nucleotide sequence