Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2649 and GFF2650 are separated by 9 nucleotides GFF2650 and GFF2651 overlap by 4 nucleotides GFF2651 and GFF2652 are separated by 117 nucleotides GFF2652 and GFF2653 are separated by 1 nucleotides
GFF2649 - Benzoate transport protein, at 243,890 to 245,074
GFF2649
GFF2650 - Glutathione synthetase (EC 6.3.2.3), at 245,084 to 246,031
GFF2650
GFF2651 - hypothetical protein, at 246,028 to 246,282
GFF2651
GFF2652 - Transcriptional regulator, MarR family, at 246,400 to 246,888
GFF2652
GFF2653 - Na(+) H(+) antiporter subunit G, at 246,890 to 247,291
GFF2653
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.370 kb on + strand, within GFF2649 at 244.436 kb on + strand, within GFF2649 at 244.437 kb on - strand, within GFF2649 at 244.437 kb on - strand, within GFF2649 at 244.437 kb on - strand, within GFF2649 at 244.562 kb on - strand, within GFF2649 at 244.614 kb on - strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.793 kb on - strand, within GFF2649 at 245.048 kb on + strand at 245.049 kb on - strand at 245.375 kb on + strand, within GFF2650 at 245.375 kb on + strand, within GFF2650 at 245.684 kb on + strand, within GFF2650 at 246.115 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.313 kb on + strand at 246.313 kb on + strand at 246.314 kb on - strand at 246.318 kb on + strand at 246.318 kb on + strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.419 kb on - strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.431 kb on - strand at 246.431 kb on - strand at 246.431 kb on - strand at 246.478 kb on + strand, within GFF2652 at 246.631 kb on + strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.697 kb on + strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 244,370 + GFF2649 0.41 -0.4 244,436 + GFF2649 0.46 -0.1 244,437 - GFF2649 0.46 +0.5 244,437 - GFF2649 0.46 -0.1 244,437 - GFF2649 0.46 +0.1 244,562 - GFF2649 0.57 -2.2 244,614 - GFF2649 0.61 +0.3 244,790 + GFF2649 0.76 +0.3 244,790 + GFF2649 0.76 +0.5 244,790 + GFF2649 0.76 +0.4 244,790 + GFF2649 0.76 +0.7 244,790 + GFF2649 0.76 -0.9 244,790 + GFF2649 0.76 -0.0 244,790 + GFF2649 0.76 +0.2 244,790 + GFF2649 0.76 -0.4 244,790 + GFF2649 0.76 -0.7 244,791 - GFF2649 0.76 -0.4 244,791 - GFF2649 0.76 +0.9 244,791 - GFF2649 0.76 +0.1 244,791 - GFF2649 0.76 -0.6 244,791 - GFF2649 0.76 -1.3 244,791 - GFF2649 0.76 +0.5 244,793 - GFF2649 0.76 -0.2 245,048 + -0.1 245,049 - -0.1 245,375 + GFF2650 0.31 -1.0 245,375 + GFF2650 0.31 -1.6 245,684 + GFF2650 0.63 -1.0 246,115 + GFF2651 0.34 -0.2 246,238 + GFF2651 0.82 +0.1 246,238 + GFF2651 0.82 +0.1 246,238 + GFF2651 0.82 -0.6 246,238 + GFF2651 0.82 +0.4 246,239 - GFF2651 0.83 -0.2 246,239 - GFF2651 0.83 +0.4 246,239 - GFF2651 0.83 -0.4 246,239 - GFF2651 0.83 -0.1 246,239 - GFF2651 0.83 +1.3 246,313 + -1.3 246,313 + -0.7 246,314 - -0.2 246,318 + +0.1 246,318 + +0.4 246,319 - +0.4 246,319 - +1.3 246,319 - -0.3 246,319 - +0.5 246,419 - +0.4 246,427 + +0.9 246,427 + +0.2 246,427 + +0.4 246,427 + +0.2 246,427 + -0.1 246,428 - -0.1 246,428 - -0.3 246,428 - +1.1 246,428 - +1.4 246,428 - -0.5 246,431 - +0.3 246,431 - +0.7 246,431 - +0.2 246,478 + GFF2652 0.16 -0.2 246,631 + GFF2652 0.47 -0.6 246,632 - GFF2652 0.47 +0.4 246,632 - GFF2652 0.47 +2.2 246,697 + GFF2652 0.61 -1.5 246,698 - GFF2652 0.61 +0.7 246,698 - GFF2652 0.61 -0.2 246,836 - GFF2652 0.89 +2.1 246,836 - GFF2652 0.89 +0.5
Or see this region's nucleotide sequence