Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF262 and GFF263 are separated by 16 nucleotides GFF263 and GFF264 are separated by 90 nucleotides GFF264 and GFF265 are separated by 130 nucleotides
GFF262 - sulfur oxidation protein SoxA, at 276,328 to 277,137
GFF262
GFF263 - Sulfur oxidation protein SoxX, at 277,154 to 277,804
GFF263
GFF264 - Sulfur oxidation protein SoxB, at 277,895 to 279,619
GFF264
GFF265 - Outer membrane protein (porin), at 279,750 to 280,721
GFF265
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 276.964 kb on + strand, within GFF262 at 276.965 kb on - strand, within GFF262 at 277.081 kb on + strand at 277.081 kb on + strand at 277.081 kb on + strand at 277.081 kb on + strand at 277.081 kb on + strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.082 kb on - strand at 277.238 kb on + strand, within GFF263 at 277.239 kb on - strand, within GFF263 at 277.532 kb on + strand, within GFF263 at 277.532 kb on + strand, within GFF263 at 277.532 kb on + strand, within GFF263 at 277.533 kb on - strand, within GFF263 at 277.533 kb on - strand, within GFF263 at 277.592 kb on + strand, within GFF263 at 277.592 kb on + strand, within GFF263 at 277.592 kb on + strand, within GFF263 at 277.592 kb on + strand, within GFF263 at 277.593 kb on - strand, within GFF263 at 277.593 kb on - strand, within GFF263 at 277.593 kb on - strand, within GFF263 at 277.593 kb on - strand, within GFF263 at 277.598 kb on + strand, within GFF263 at 277.598 kb on + strand, within GFF263 at 277.658 kb on + strand, within GFF263 at 277.658 kb on + strand, within GFF263 at 277.659 kb on - strand, within GFF263 at 277.659 kb on - strand, within GFF263 at 277.691 kb on + strand, within GFF263 at 277.692 kb on - strand, within GFF263 at 277.864 kb on - strand at 277.864 kb on - strand at 277.877 kb on + strand at 277.877 kb on + strand at 277.877 kb on + strand at 277.877 kb on + strand at 277.878 kb on - strand at 277.878 kb on - strand at 278.009 kb on + strand at 278.009 kb on + strand at 278.009 kb on + strand at 278.010 kb on - strand at 278.010 kb on - strand at 278.010 kb on - strand at 278.010 kb on - strand at 278.210 kb on + strand, within GFF264 at 278.210 kb on + strand, within GFF264 at 278.210 kb on + strand, within GFF264 at 278.211 kb on - strand, within GFF264 at 278.211 kb on - strand, within GFF264 at 278.240 kb on + strand, within GFF264 at 278.240 kb on + strand, within GFF264 at 278.240 kb on + strand, within GFF264 at 278.240 kb on + strand, within GFF264 at 278.241 kb on - strand, within GFF264 at 278.241 kb on - strand, within GFF264 at 278.241 kb on - strand, within GFF264 at 278.241 kb on - strand, within GFF264 at 278.606 kb on + strand, within GFF264 at 278.607 kb on - strand, within GFF264 at 278.607 kb on - strand, within GFF264 at 278.607 kb on - strand, within GFF264 at 278.630 kb on + strand, within GFF264 at 278.630 kb on + strand, within GFF264 at 278.630 kb on + strand, within GFF264 at 278.631 kb on - strand, within GFF264 at 278.631 kb on - strand, within GFF264 at 278.631 kb on - strand, within GFF264 at 278.631 kb on - strand, within GFF264 at 278.631 kb on - strand, within GFF264 at 278.631 kb on - strand, within GFF264 at 278.943 kb on - strand, within GFF264 at 279.072 kb on - strand, within GFF264 at 279.206 kb on + strand, within GFF264 at 279.206 kb on + strand, within GFF264 at 279.206 kb on + strand, within GFF264 at 279.207 kb on - strand, within GFF264 at 279.240 kb on - strand, within GFF264 at 279.329 kb on + strand, within GFF264 at 279.329 kb on + strand, within GFF264 at 279.329 kb on + strand, within GFF264 at 279.329 kb on + strand, within GFF264 at 279.330 kb on - strand, within GFF264 at 279.330 kb on - strand, within GFF264 at 279.332 kb on + strand, within GFF264 at 279.332 kb on + strand, within GFF264 at 279.332 kb on + strand, within GFF264 at 279.333 kb on - strand, within GFF264 at 279.333 kb on - strand, within GFF264 at 279.333 kb on - strand, within GFF264 at 279.333 kb on - strand, within GFF264 at 279.333 kb on - strand, within GFF264 at 279.333 kb on - strand, within GFF264 at 279.374 kb on + strand, within GFF264 at 279.374 kb on + strand, within GFF264 at 279.375 kb on - strand, within GFF264 at 279.375 kb on - strand, within GFF264 at 279.375 kb on - strand, within GFF264 at 279.375 kb on - strand, within GFF264 at 279.375 kb on - strand, within GFF264 at 279.458 kb on + strand at 279.458 kb on + strand at 279.458 kb on + strand at 279.458 kb on + strand at 279.458 kb on + strand at 279.458 kb on + strand at 279.458 kb on + strand at 279.459 kb on - strand at 279.459 kb on - strand at 279.459 kb on - strand at 279.459 kb on - strand at 279.459 kb on - strand at 279.459 kb on - strand at 279.459 kb on - strand at 279.531 kb on - strand at 279.688 kb on + strand at 279.688 kb on + strand at 279.689 kb on - strand at 279.689 kb on - strand at 279.695 kb on + strand at 279.695 kb on + strand at 279.696 kb on - strand at 279.696 kb on - strand at 279.696 kb on - strand at 279.696 kb on - strand at 279.696 kb on - strand at 279.696 kb on - strand at 279.778 kb on + strand at 279.778 kb on + strand at 279.778 kb on + strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.835 kb on + strand at 279.835 kb on + strand at 279.835 kb on + strand at 279.836 kb on - strand at 279.836 kb on - strand at 279.844 kb on + strand at 279.844 kb on + strand at 279.844 kb on + strand at 279.845 kb on - strand at 279.845 kb on - strand at 279.845 kb on - strand at 279.871 kb on + strand, within GFF265 at 279.871 kb on + strand, within GFF265 at 279.871 kb on + strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.872 kb on - strand, within GFF265 at 279.940 kb on + strand, within GFF265 at 279.940 kb on + strand, within GFF265 at 279.940 kb on + strand, within GFF265 at 279.940 kb on + strand, within GFF265 at 279.940 kb on + strand, within GFF265 at 279.946 kb on + strand, within GFF265 at 279.946 kb on + strand, within GFF265 at 279.946 kb on + strand, within GFF265 at 279.947 kb on - strand, within GFF265 at 279.947 kb on - strand, within GFF265 at 279.947 kb on - strand, within GFF265 at 279.997 kb on + strand, within GFF265 at 279.998 kb on - strand, within GFF265 at 279.998 kb on - strand, within GFF265 at 280.072 kb on + strand, within GFF265 at 280.072 kb on + strand, within GFF265 at 280.073 kb on - strand, within GFF265 at 280.073 kb on - strand, within GFF265 at 280.073 kb on - strand, within GFF265 at 280.073 kb on - strand, within GFF265 at 280.093 kb on + strand, within GFF265 at 280.093 kb on + strand, within GFF265 at 280.093 kb on + strand, within GFF265 at 280.093 kb on + strand, within GFF265 at 280.094 kb on - strand, within GFF265 at 280.094 kb on - strand, within GFF265 at 280.157 kb on - strand, within GFF265 at 280.213 kb on + strand, within GFF265 at 280.213 kb on + strand, within GFF265 at 280.214 kb on - strand, within GFF265 at 280.214 kb on - strand, within GFF265 at 280.256 kb on - strand, within GFF265 at 280.285 kb on + strand, within GFF265 at 280.306 kb on + strand, within GFF265 at 280.307 kb on - strand, within GFF265 at 280.307 kb on - strand, within GFF265
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 276,964 + GFF262 0.79 +0.2 276,965 - GFF262 0.79 -0.3 277,081 + -0.9 277,081 + +0.6 277,081 + +0.3 277,081 + +1.1 277,081 + -2.9 277,082 - +0.6 277,082 - -0.2 277,082 - -0.2 277,082 - +0.8 277,082 - -0.2 277,082 - -0.6 277,082 - +0.4 277,082 - +0.8 277,082 - +0.9 277,238 + GFF263 0.13 +0.3 277,239 - GFF263 0.13 +0.2 277,532 + GFF263 0.58 -0.2 277,532 + GFF263 0.58 -0.4 277,532 + GFF263 0.58 -0.2 277,533 - GFF263 0.58 -0.3 277,533 - GFF263 0.58 -0.3 277,592 + GFF263 0.67 +0.1 277,592 + GFF263 0.67 -0.1 277,592 + GFF263 0.67 +0.8 277,592 + GFF263 0.67 -0.6 277,593 - GFF263 0.67 -0.5 277,593 - GFF263 0.67 -1.3 277,593 - GFF263 0.67 +1.6 277,593 - GFF263 0.67 -0.1 277,598 + GFF263 0.68 -0.3 277,598 + GFF263 0.68 -0.2 277,658 + GFF263 0.77 -1.3 277,658 + GFF263 0.77 -0.1 277,659 - GFF263 0.78 -0.2 277,659 - GFF263 0.78 -0.4 277,691 + GFF263 0.82 +0.4 277,692 - GFF263 0.83 -0.6 277,864 - +0.2 277,864 - +0.2 277,877 + +0.7 277,877 + -0.4 277,877 + +1.1 277,877 + -0.5 277,878 - -0.2 277,878 - -0.5 278,009 + +1.3 278,009 + +0.1 278,009 + +0.3 278,010 - +1.8 278,010 - +0.0 278,010 - -0.2 278,010 - +0.4 278,210 + GFF264 0.18 +0.1 278,210 + GFF264 0.18 -1.9 278,210 + GFF264 0.18 -0.9 278,211 - GFF264 0.18 -0.3 278,211 - GFF264 0.18 +0.1 278,240 + GFF264 0.20 +0.1 278,240 + GFF264 0.20 -0.5 278,240 + GFF264 0.20 +0.6 278,240 + GFF264 0.20 +0.1 278,241 - GFF264 0.20 +0.6 278,241 - GFF264 0.20 +0.6 278,241 - GFF264 0.20 -0.6 278,241 - GFF264 0.20 +1.1 278,606 + GFF264 0.41 +0.2 278,607 - GFF264 0.41 +0.3 278,607 - GFF264 0.41 -1.3 278,607 - GFF264 0.41 -1.3 278,630 + GFF264 0.43 +0.0 278,630 + GFF264 0.43 -1.3 278,630 + GFF264 0.43 +0.2 278,631 - GFF264 0.43 -0.7 278,631 - GFF264 0.43 -0.5 278,631 - GFF264 0.43 +0.1 278,631 - GFF264 0.43 -0.2 278,631 - GFF264 0.43 +3.1 278,631 - GFF264 0.43 +1.6 278,943 - GFF264 0.61 +1.1 279,072 - GFF264 0.68 +0.3 279,206 + GFF264 0.76 +0.6 279,206 + GFF264 0.76 +0.1 279,206 + GFF264 0.76 -0.3 279,207 - GFF264 0.76 +0.1 279,240 - GFF264 0.78 -0.1 279,329 + GFF264 0.83 +1.8 279,329 + GFF264 0.83 +0.0 279,329 + GFF264 0.83 -0.1 279,329 + GFF264 0.83 +0.8 279,330 - GFF264 0.83 -0.2 279,330 - GFF264 0.83 +0.4 279,332 + GFF264 0.83 +0.4 279,332 + GFF264 0.83 +0.5 279,332 + GFF264 0.83 +0.7 279,333 - GFF264 0.83 +0.1 279,333 - GFF264 0.83 -0.0 279,333 - GFF264 0.83 -0.4 279,333 - GFF264 0.83 +1.8 279,333 - GFF264 0.83 -0.1 279,333 - GFF264 0.83 +0.6 279,374 + GFF264 0.86 +0.6 279,374 + GFF264 0.86 +0.1 279,375 - GFF264 0.86 +0.5 279,375 - GFF264 0.86 +0.9 279,375 - GFF264 0.86 +1.1 279,375 - GFF264 0.86 -0.3 279,375 - GFF264 0.86 +0.3 279,458 + +0.4 279,458 + +0.1 279,458 + -0.2 279,458 + +0.4 279,458 + +0.1 279,458 + -0.6 279,458 + +0.1 279,459 - -0.0 279,459 - -2.4 279,459 - -0.1 279,459 - -0.2 279,459 - +0.1 279,459 - +0.4 279,459 - -1.3 279,531 - +0.3 279,688 + -0.2 279,688 + -0.4 279,689 - +1.5 279,689 - +0.8 279,695 + -0.3 279,695 + +0.6 279,696 - +0.9 279,696 - +0.0 279,696 - -0.1 279,696 - -0.5 279,696 - -0.3 279,696 - -0.1 279,778 + +0.3 279,778 + +0.1 279,778 + +0.7 279,779 - -1.8 279,779 - -0.6 279,779 - +0.7 279,779 - +0.4 279,779 - -0.2 279,835 + +0.4 279,835 + +1.6 279,835 + +0.2 279,836 - +0.3 279,836 - +1.0 279,844 + +0.0 279,844 + -1.3 279,844 + -0.1 279,845 - +0.2 279,845 - +0.1 279,845 - -0.8 279,871 + GFF265 0.12 +0.2 279,871 + GFF265 0.12 +0.5 279,871 + GFF265 0.12 +0.6 279,872 - GFF265 0.13 -0.1 279,872 - GFF265 0.13 +0.5 279,872 - GFF265 0.13 +0.6 279,872 - GFF265 0.13 +1.4 279,872 - GFF265 0.13 +0.8 279,872 - GFF265 0.13 -1.3 279,872 - GFF265 0.13 -0.1 279,872 - GFF265 0.13 -0.5 279,940 + GFF265 0.20 -0.1 279,940 + GFF265 0.20 -0.0 279,940 + GFF265 0.20 -0.2 279,940 + GFF265 0.20 +0.5 279,940 + GFF265 0.20 +0.2 279,946 + GFF265 0.20 +0.1 279,946 + GFF265 0.20 +0.4 279,946 + GFF265 0.20 +0.7 279,947 - GFF265 0.20 -0.1 279,947 - GFF265 0.20 -0.1 279,947 - GFF265 0.20 +0.1 279,997 + GFF265 0.25 +0.3 279,998 - GFF265 0.26 -0.3 279,998 - GFF265 0.26 +0.5 280,072 + GFF265 0.33 +0.1 280,072 + GFF265 0.33 -0.7 280,073 - GFF265 0.33 +0.5 280,073 - GFF265 0.33 +0.0 280,073 - GFF265 0.33 -0.1 280,073 - GFF265 0.33 -0.5 280,093 + GFF265 0.35 -0.3 280,093 + GFF265 0.35 +0.4 280,093 + GFF265 0.35 +1.6 280,093 + GFF265 0.35 -1.7 280,094 - GFF265 0.35 -0.2 280,094 - GFF265 0.35 +0.5 280,157 - GFF265 0.42 +0.4 280,213 + GFF265 0.48 +0.6 280,213 + GFF265 0.48 -1.5 280,214 - GFF265 0.48 +0.6 280,214 - GFF265 0.48 +0.1 280,256 - GFF265 0.52 +1.2 280,285 + GFF265 0.55 +0.5 280,306 + GFF265 0.57 +0.1 280,307 - GFF265 0.57 +0.2 280,307 - GFF265 0.57 -0.6
Or see this region's nucleotide sequence