Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2613 and GFF2614 are separated by 13 nucleotides GFF2614 and GFF2615 are separated by 15 nucleotides GFF2615 and GFF2616 are separated by 130 nucleotides GFF2616 and GFF2617 overlap by 4 nucleotides
GFF2613 - PTS system nitrogen-specific IIA component, PtsN, at 206,347 to 206,817
GFF2613
GFF2614 - HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-), at 206,831 to 207,781
GFF2614
GFF2615 - Ferric uptake regulation protein FUR, at 207,797 to 208,285
GFF2615
GFF2616 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 208,416 to 208,952
GFF2616
GFF2617 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 208,949 to 209,767
GFF2617
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 206.990 kb on + strand, within GFF2614 at 206.991 kb on - strand, within GFF2614 at 207.038 kb on + strand, within GFF2614 at 207.038 kb on + strand, within GFF2614 at 207.038 kb on + strand, within GFF2614 at 207.039 kb on - strand, within GFF2614 at 207.039 kb on - strand, within GFF2614 at 207.230 kb on + strand, within GFF2614 at 207.731 kb on + strand at 207.732 kb on - strand at 207.855 kb on + strand, within GFF2615 at 207.856 kb on - strand, within GFF2615 at 208.077 kb on + strand, within GFF2615 at 208.078 kb on - strand, within GFF2615 at 208.078 kb on - strand, within GFF2615 at 208.328 kb on + strand at 208.328 kb on + strand at 208.344 kb on + strand at 208.345 kb on - strand at 208.345 kb on - strand at 208.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 206,990 + GFF2614 0.17 -3.5 206,991 - GFF2614 0.17 -0.1 207,038 + GFF2614 0.22 -1.1 207,038 + GFF2614 0.22 -1.9 207,038 + GFF2614 0.22 -1.4 207,039 - GFF2614 0.22 -2.2 207,039 - GFF2614 0.22 -1.4 207,230 + GFF2614 0.42 -0.4 207,731 + -3.2 207,732 - -2.1 207,855 + GFF2615 0.12 -2.7 207,856 - GFF2615 0.12 -2.7 208,077 + GFF2615 0.57 -3.6 208,078 - GFF2615 0.57 -3.8 208,078 - GFF2615 0.57 -2.6 208,328 + -0.2 208,328 + -0.1 208,344 + -2.1 208,345 - -0.2 208,345 - -1.2 208,917 + +0.5
Or see this region's nucleotide sequence