Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2566 and GFF2567 are separated by 121 nucleotides GFF2567 and GFF2568 are separated by 88 nucleotides GFF2568 and GFF2569 are separated by 15 nucleotides
GFF2566 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 153,494 to 157,093
GFF2566
GFF2567 - Preprotein translocase subunit YajC (TC 3.A.5.1.1), at 157,215 to 157,541
GFF2567
GFF2568 - Protein-export membrane protein SecD (TC 3.A.5.1.1), at 157,630 to 159,504
GFF2568
GFF2569 - Protein-export membrane protein SecF (TC 3.A.5.1.1), at 159,520 to 160,473
GFF2569
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.887 kb on + strand at 156.888 kb on - strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.116 kb on + strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.117 kb on - strand at 157.233 kb on + strand at 157.233 kb on + strand at 157.233 kb on + strand at 157.233 kb on + strand at 157.234 kb on - strand at 157.314 kb on + strand, within GFF2567 at 157.314 kb on + strand, within GFF2567 at 157.314 kb on + strand, within GFF2567 at 157.315 kb on - strand, within GFF2567 at 157.315 kb on - strand, within GFF2567 at 157.315 kb on - strand, within GFF2567 at 157.446 kb on + strand, within GFF2567 at 157.447 kb on - strand, within GFF2567 at 159.418 kb on + strand at 159.418 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.469 kb on + strand at 160.470 kb on - strand at 160.470 kb on - strand at 160.470 kb on - strand at 160.470 kb on - strand at 160.470 kb on - strand at 160.470 kb on - strand at 160.471 kb on + strand at 160.472 kb on - strand at 160.472 kb on - strand at 160.494 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 156,887 + -0.5 156,888 - -1.2 157,116 + +0.4 157,116 + -0.9 157,116 + -0.5 157,116 + -0.3 157,116 + +0.2 157,116 + +1.4 157,116 + +0.1 157,116 + -0.2 157,116 + +0.0 157,117 - -0.4 157,117 - -0.1 157,117 - -0.3 157,117 - -2.2 157,117 - -0.8 157,117 - +0.2 157,117 - -1.0 157,117 - -0.9 157,117 - +0.0 157,117 - -0.2 157,117 - +2.5 157,233 + +0.4 157,233 + -1.4 157,233 + +0.6 157,233 + +0.9 157,234 - +1.2 157,314 + GFF2567 0.30 -0.1 157,314 + GFF2567 0.30 -0.1 157,314 + GFF2567 0.30 +0.4 157,315 - GFF2567 0.31 +1.3 157,315 - GFF2567 0.31 +0.5 157,315 - GFF2567 0.31 +1.1 157,446 + GFF2567 0.71 -0.9 157,447 - GFF2567 0.71 -0.4 159,418 + -3.8 159,418 + -1.8 160,469 + -0.1 160,469 + -0.1 160,469 + +0.2 160,469 + +0.3 160,469 + +0.4 160,469 + +0.1 160,469 + -0.1 160,469 + +0.3 160,469 + +0.1 160,469 + +0.3 160,470 - +0.4 160,470 - -0.7 160,470 - -0.5 160,470 - -0.3 160,470 - -0.1 160,470 - -0.6 160,471 + +0.9 160,472 - +0.2 160,472 - +0.8 160,494 - +0.2
Or see this region's nucleotide sequence