Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2460 and GFF2461 are separated by 601 nucleotides GFF2461 and GFF2462 are separated by 5 nucleotides GFF2462 and GFF2463 are separated by 2 nucleotides
GFF2460 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 42,167 to 43,183
GFF2460
GFF2461 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 43,785 to 43,931
GFF2461
GFF2462 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 43,937 to 44,662
GFF2462
GFF2463 - COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases, at 44,665 to 45,756
GFF2463
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1
2 at 44.544 kb on - strand, within GFF2462 at 44.774 kb on + strand at 44.774 kb on + strand at 44.774 kb on + strand at 44.774 kb on + strand at 44.774 kb on + strand at 44.804 kb on + strand, within GFF2463 at 44.804 kb on + strand, within GFF2463 at 44.804 kb on + strand, within GFF2463 at 44.894 kb on + strand, within GFF2463 at 44.895 kb on - strand, within GFF2463 at 45.038 kb on + strand, within GFF2463 at 45.038 kb on + strand, within GFF2463 at 45.038 kb on + strand, within GFF2463 at 45.039 kb on - strand, within GFF2463 at 45.039 kb on - strand, within GFF2463 at 45.039 kb on - strand, within GFF2463 at 45.039 kb on - strand, within GFF2463 at 45.140 kb on + strand, within GFF2463 at 45.141 kb on - strand, within GFF2463 at 45.141 kb on - strand, within GFF2463 at 45.141 kb on - strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.155 kb on + strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.156 kb on - strand, within GFF2463 at 45.260 kb on + strand, within GFF2463 at 45.260 kb on + strand, within GFF2463 at 45.308 kb on + strand, within GFF2463 at 45.309 kb on - strand, within GFF2463 at 45.374 kb on + strand, within GFF2463 at 45.374 kb on + strand, within GFF2463 at 45.374 kb on + strand, within GFF2463 at 45.375 kb on - strand, within GFF2463 at 45.375 kb on - strand, within GFF2463
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 44,544 - GFF2462 0.84 +0.8 44,774 + +0.9 44,774 + -0.2 44,774 + +1.3 44,774 + +1.8 44,774 + +1.4 44,804 + GFF2463 0.13 +0.3 44,804 + GFF2463 0.13 +0.5 44,804 + GFF2463 0.13 +0.6 44,894 + GFF2463 0.21 +0.9 44,895 - GFF2463 0.21 +0.6 45,038 + GFF2463 0.34 +0.8 45,038 + GFF2463 0.34 +1.1 45,038 + GFF2463 0.34 -0.1 45,039 - GFF2463 0.34 +0.3 45,039 - GFF2463 0.34 +0.9 45,039 - GFF2463 0.34 +0.4 45,039 - GFF2463 0.34 +0.1 45,140 + GFF2463 0.43 +1.1 45,141 - GFF2463 0.44 +1.0 45,141 - GFF2463 0.44 +0.8 45,141 - GFF2463 0.44 +0.9 45,155 + GFF2463 0.45 +0.5 45,155 + GFF2463 0.45 +0.7 45,155 + GFF2463 0.45 +1.1 45,155 + GFF2463 0.45 -0.1 45,155 + GFF2463 0.45 +1.9 45,155 + GFF2463 0.45 +0.4 45,155 + GFF2463 0.45 +0.8 45,155 + GFF2463 0.45 +1.2 45,155 + GFF2463 0.45 +0.9 45,156 - GFF2463 0.45 +1.7 45,156 - GFF2463 0.45 +0.4 45,156 - GFF2463 0.45 +0.5 45,156 - GFF2463 0.45 +0.5 45,156 - GFF2463 0.45 +0.5 45,156 - GFF2463 0.45 +1.6 45,156 - GFF2463 0.45 +0.6 45,156 - GFF2463 0.45 +0.8 45,260 + GFF2463 0.54 +0.6 45,260 + GFF2463 0.54 +1.9 45,308 + GFF2463 0.59 +0.9 45,309 - GFF2463 0.59 +1.8 45,374 + GFF2463 0.65 +0.5 45,374 + GFF2463 0.65 +0.1 45,374 + GFF2463 0.65 +1.5 45,375 - GFF2463 0.65 +0.6 45,375 - GFF2463 0.65 +1.0
Or see this region's nucleotide sequence