Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2456 and GFF2457 are separated by 9 nucleotides GFF2457 and GFF2458 are separated by 39 nucleotides GFF2458 and GFF2459 are separated by 24 nucleotides GFF2459 and GFF2460 are separated by 127 nucleotides
GFF2456 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative, at 38,695 to 39,552
GFF2456
GFF2457 - hypothetical protein, at 39,562 to 40,086
GFF2457
GFF2458 - putative membrane protein, at 40,126 to 41,301
GFF2458
GFF2459 - Aspartate racemase (EC 5.1.1.13), at 41,326 to 42,039
GFF2459
GFF2460 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 42,167 to 43,183
GFF2460
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2 at 39.244 kb on + strand, within GFF2456 at 39.244 kb on + strand, within GFF2456 at 39.244 kb on + strand, within GFF2456 at 39.245 kb on - strand, within GFF2456 at 39.245 kb on - strand, within GFF2456 at 39.245 kb on - strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.463 kb on + strand, within GFF2456 at 39.464 kb on - strand, within GFF2456 at 39.464 kb on - strand, within GFF2456 at 39.502 kb on + strand at 39.502 kb on + strand at 39.503 kb on - strand at 39.503 kb on - strand at 39.503 kb on - strand at 40.199 kb on - strand at 40.334 kb on + strand, within GFF2458 at 40.334 kb on + strand, within GFF2458 at 40.811 kb on + strand, within GFF2458 at 40.812 kb on - strand, within GFF2458 at 40.812 kb on - strand, within GFF2458 at 40.812 kb on - strand, within GFF2458 at 40.962 kb on - strand, within GFF2458 at 40.962 kb on - strand, within GFF2458 at 40.962 kb on - strand, within GFF2458 at 40.982 kb on + strand, within GFF2458 at 40.982 kb on + strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.983 kb on - strand, within GFF2458 at 40.985 kb on + strand, within GFF2458 at 40.986 kb on - strand, within GFF2458 at 41.162 kb on + strand, within GFF2458 at 41.162 kb on + strand, within GFF2458 at 41.163 kb on - strand, within GFF2458 at 41.301 kb on + strand at 41.301 kb on + strand at 41.301 kb on + strand at 41.302 kb on - strand at 41.302 kb on - strand at 41.302 kb on - strand at 41.302 kb on - strand at 41.302 kb on - strand at 41.302 kb on - strand at 41.302 kb on - strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.315 kb on + strand at 41.473 kb on + strand, within GFF2459 at 41.474 kb on - strand, within GFF2459 at 41.474 kb on - strand, within GFF2459 at 41.474 kb on - strand, within GFF2459 at 41.731 kb on + strand, within GFF2459 at 41.731 kb on + strand, within GFF2459 at 41.732 kb on - strand, within GFF2459 at 41.837 kb on - strand, within GFF2459 at 41.976 kb on + strand at 41.976 kb on + strand at 41.976 kb on + strand at 41.976 kb on + strand at 42.182 kb on + strand at 42.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 39,244 + GFF2456 0.64 +0.1 39,244 + GFF2456 0.64 +0.5 39,244 + GFF2456 0.64 +0.3 39,245 - GFF2456 0.64 -0.1 39,245 - GFF2456 0.64 +0.3 39,245 - GFF2456 0.64 +0.2 39,364 + GFF2456 0.78 -0.6 39,364 + GFF2456 0.78 +0.5 39,364 + GFF2456 0.78 +0.8 39,364 + GFF2456 0.78 +0.1 39,364 + GFF2456 0.78 -1.0 39,364 + GFF2456 0.78 -0.6 39,365 - GFF2456 0.78 +0.9 39,365 - GFF2456 0.78 +0.5 39,365 - GFF2456 0.78 +1.1 39,365 - GFF2456 0.78 +0.1 39,365 - GFF2456 0.78 +0.2 39,463 + GFF2456 0.90 -0.3 39,464 - GFF2456 0.90 +0.1 39,464 - GFF2456 0.90 +0.5 39,502 + -0.3 39,502 + +0.7 39,503 - +0.3 39,503 - +1.0 39,503 - -0.3 40,199 - -0.0 40,334 + GFF2458 0.18 +0.7 40,334 + GFF2458 0.18 +0.2 40,811 + GFF2458 0.58 +0.7 40,812 - GFF2458 0.58 -0.1 40,812 - GFF2458 0.58 -0.7 40,812 - GFF2458 0.58 +0.2 40,962 - GFF2458 0.71 -1.4 40,962 - GFF2458 0.71 +0.9 40,962 - GFF2458 0.71 +0.8 40,982 + GFF2458 0.73 +0.0 40,982 + GFF2458 0.73 +0.9 40,983 - GFF2458 0.73 +0.1 40,983 - GFF2458 0.73 +0.1 40,983 - GFF2458 0.73 -0.3 40,983 - GFF2458 0.73 -0.4 40,983 - GFF2458 0.73 +0.5 40,983 - GFF2458 0.73 +0.1 40,983 - GFF2458 0.73 +0.6 40,985 + GFF2458 0.73 -0.1 40,986 - GFF2458 0.73 -1.2 41,162 + GFF2458 0.88 +0.9 41,162 + GFF2458 0.88 -0.2 41,163 - GFF2458 0.88 -1.1 41,301 + +2.1 41,301 + +0.3 41,301 + +0.2 41,302 - -0.2 41,302 - +0.2 41,302 - +0.4 41,302 - +1.1 41,302 - -0.0 41,302 - -1.5 41,302 - -0.1 41,315 + +1.7 41,315 + +0.8 41,315 + +0.6 41,315 + -0.3 41,315 + +0.2 41,315 + -0.1 41,315 + +0.0 41,315 + +0.9 41,315 + -0.7 41,315 + +0.3 41,473 + GFF2459 0.21 +2.3 41,474 - GFF2459 0.21 -0.1 41,474 - GFF2459 0.21 -0.1 41,474 - GFF2459 0.21 -0.1 41,731 + GFF2459 0.57 -0.4 41,731 + GFF2459 0.57 -1.1 41,732 - GFF2459 0.57 -0.8 41,837 - GFF2459 0.72 +0.4 41,976 + +0.9 41,976 + +0.7 41,976 + -0.1 41,976 + -0.6 42,182 + -0.1 42,183 - -0.5
Or see this region's nucleotide sequence