Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2401 and GFF2402 are separated by 432 nucleotides GFF2402 and GFF2403 are separated by 100 nucleotides
GFF2401 - Mobile element protein, at 46,809 to 47,312
GFF2401
GFF2402 - Transcriptional regulator, LysR family, at 47,745 to 48,638
GFF2402
GFF2403 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 48,739 to 50,487
GFF2403
Position (kb) 47
48
49 Strain fitness (log2 ratio) -1
0
1
2
3 at 46.765 kb on - strand at 46.765 kb on - strand at 46.900 kb on + strand, within GFF2401 at 46.900 kb on + strand, within GFF2401 at 46.901 kb on - strand, within GFF2401 at 46.957 kb on + strand, within GFF2401 at 46.957 kb on + strand, within GFF2401 at 46.958 kb on - strand, within GFF2401 at 47.060 kb on + strand, within GFF2401 at 47.061 kb on - strand, within GFF2401 at 47.061 kb on - strand, within GFF2401 at 47.248 kb on + strand, within GFF2401 at 47.248 kb on + strand, within GFF2401 at 47.249 kb on - strand, within GFF2401 at 47.249 kb on - strand, within GFF2401 at 47.612 kb on + strand at 47.613 kb on - strand at 47.613 kb on - strand at 47.746 kb on + strand at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.837 kb on - strand, within GFF2402 at 47.837 kb on - strand, within GFF2402 at 47.837 kb on - strand, within GFF2402 at 48.034 kb on + strand, within GFF2402 at 48.035 kb on - strand, within GFF2402 at 48.035 kb on - strand, within GFF2402 at 48.035 kb on - strand, within GFF2402 at 48.159 kb on - strand, within GFF2402 at 48.160 kb on + strand, within GFF2402 at 48.160 kb on + strand, within GFF2402 at 48.161 kb on - strand, within GFF2402 at 48.638 kb on + strand at 48.644 kb on + strand at 48.653 kb on + strand at 48.654 kb on - strand at 48.817 kb on + strand at 48.981 kb on + strand, within GFF2403 at 48.981 kb on + strand, within GFF2403 at 48.981 kb on + strand, within GFF2403 at 49.046 kb on + strand, within GFF2403 at 49.144 kb on + strand, within GFF2403 at 49.145 kb on - strand, within GFF2403 at 49.249 kb on + strand, within GFF2403
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 46,765 - -0.6 46,765 - +0.0 46,900 + GFF2401 0.18 +0.4 46,900 + GFF2401 0.18 -0.1 46,901 - GFF2401 0.18 +0.3 46,957 + GFF2401 0.29 +3.5 46,957 + GFF2401 0.29 -1.4 46,958 - GFF2401 0.30 +0.9 47,060 + GFF2401 0.50 +0.1 47,061 - GFF2401 0.50 -0.2 47,061 - GFF2401 0.50 -0.2 47,248 + GFF2401 0.87 -0.2 47,248 + GFF2401 0.87 +0.1 47,249 - GFF2401 0.87 -0.2 47,249 - GFF2401 0.87 -1.1 47,612 + -0.2 47,613 - -0.2 47,613 - -0.1 47,746 + -0.6 47,836 + GFF2402 0.10 +0.3 47,836 + GFF2402 0.10 -0.2 47,836 + GFF2402 0.10 +0.2 47,836 + GFF2402 0.10 +0.5 47,836 + GFF2402 0.10 -0.3 47,836 + GFF2402 0.10 -0.4 47,837 - GFF2402 0.10 -0.0 47,837 - GFF2402 0.10 +1.1 47,837 - GFF2402 0.10 -0.7 48,034 + GFF2402 0.32 +0.2 48,035 - GFF2402 0.32 +0.4 48,035 - GFF2402 0.32 -0.1 48,035 - GFF2402 0.32 +0.1 48,159 - GFF2402 0.46 +1.5 48,160 + GFF2402 0.46 -0.1 48,160 + GFF2402 0.46 +0.6 48,161 - GFF2402 0.47 +0.1 48,638 + +0.9 48,644 + -1.6 48,653 + +0.8 48,654 - -0.2 48,817 + -0.9 48,981 + GFF2403 0.14 +0.6 48,981 + GFF2403 0.14 +0.1 48,981 + GFF2403 0.14 -0.1 49,046 + GFF2403 0.18 +0.5 49,144 + GFF2403 0.23 -0.3 49,145 - GFF2403 0.23 +0.4 49,249 + GFF2403 0.29 -0.3
Or see this region's nucleotide sequence