Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2394 and GFF2395 are separated by 324 nucleotides GFF2395 and GFF2396 overlap by 4 nucleotides GFF2396 and GFF2397 are separated by 912 nucleotides
GFF2394 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 37,791 to 39,617
GFF2394
GFF2395 - FOG: GGDEF domain, at 39,942 to 40,445
GFF2395
GFF2396 - hypothetical protein, at 40,442 to 40,852
GFF2396
GFF2397 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 41,765 to 43,054
GFF2397
Position (kb) 40
41 Strain fitness (log2 ratio) -1
0
1 at 39.459 kb on + strand at 39.621 kb on + strand at 39.621 kb on + strand at 39.622 kb on - strand at 39.635 kb on - strand at 39.720 kb on + strand at 39.721 kb on - strand at 39.822 kb on + strand at 39.864 kb on + strand at 39.915 kb on - strand at 40.270 kb on - strand, within GFF2395 at 40.270 kb on - strand, within GFF2395 at 40.270 kb on - strand, within GFF2395 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.531 kb on - strand, within GFF2396 at 40.531 kb on - strand, within GFF2396 at 40.675 kb on + strand, within GFF2396 at 40.676 kb on - strand, within GFF2396 at 40.676 kb on - strand, within GFF2396 at 40.797 kb on + strand, within GFF2396 at 40.797 kb on + strand, within GFF2396 at 41.038 kb on + strand at 41.039 kb on - strand at 41.039 kb on - strand at 41.039 kb on - strand at 41.046 kb on + strand at 41.047 kb on - strand at 41.047 kb on - strand at 41.090 kb on + strand at 41.090 kb on + strand at 41.090 kb on + strand at 41.091 kb on - strand at 41.348 kb on - strand at 41.355 kb on + strand at 41.355 kb on + strand at 41.356 kb on - strand at 41.381 kb on + strand at 41.382 kb on - strand at 41.439 kb on + strand at 41.440 kb on - strand at 41.440 kb on - strand at 41.440 kb on - strand at 41.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 39,459 + -0.1 39,621 + -0.0 39,621 + +0.7 39,622 - -0.3 39,635 - +0.4 39,720 + +0.2 39,721 - +0.5 39,822 + +1.1 39,864 + +1.3 39,915 - +0.3 40,270 - GFF2395 0.65 +1.5 40,270 - GFF2395 0.65 +0.1 40,270 - GFF2395 0.65 -1.0 40,530 + GFF2396 0.21 +0.5 40,530 + GFF2396 0.21 -0.4 40,530 + GFF2396 0.21 -0.5 40,530 + GFF2396 0.21 +0.3 40,531 - GFF2396 0.22 +0.4 40,531 - GFF2396 0.22 +0.9 40,675 + GFF2396 0.57 -0.6 40,676 - GFF2396 0.57 -0.3 40,676 - GFF2396 0.57 -0.5 40,797 + GFF2396 0.86 -0.3 40,797 + GFF2396 0.86 -0.2 41,038 + +0.1 41,039 - -0.1 41,039 - +0.1 41,039 - +0.8 41,046 + -1.4 41,047 - -0.6 41,047 - +0.6 41,090 + +0.5 41,090 + -1.4 41,090 + -0.8 41,091 - -0.6 41,348 - +0.9 41,355 + -0.4 41,355 + +0.4 41,356 - +0.6 41,381 + +0.3 41,382 - -0.1 41,439 + +0.6 41,440 - -0.2 41,440 - +0.0 41,440 - +0.2 41,440 - +0.1
Or see this region's nucleotide sequence