Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2300 and GFF2301 are separated by 20 nucleotides GFF2301 and GFF2302 are separated by 319 nucleotides GFF2302 and GFF2303 overlap by 4 nucleotides GFF2303 and GFF2304 are separated by 143 nucleotides GFF2304 and GFF2305 are separated by 80 nucleotides
GFF2300 - Outer membrane protein (porin), at 1,185,237 to 1,186,457
GFF2300
GFF2301 - hypothetical protein, at 1,186,478 to 1,186,846
GFF2301
GFF2302 - hypothetical protein, at 1,187,166 to 1,187,603
GFF2302
GFF2303 - hypothetical protein, at 1,187,600 to 1,187,926
GFF2303
GFF2304 - hypothetical protein, at 1,188,070 to 1,188,396
GFF2304
GFF2305 - Cardiolipin synthetase (EC 2.7.8.-), at 1,188,477 to 1,189,868
GFF2305
Position (kb) 1187
1188 Strain fitness (log2 ratio) -1
0
1
2 at 1186.174 kb on - strand, within GFF2300 at 1186.174 kb on - strand, within GFF2300 at 1186.344 kb on + strand at 1186.344 kb on + strand at 1186.344 kb on + strand at 1186.345 kb on - strand at 1186.345 kb on - strand at 1186.566 kb on + strand, within GFF2301 at 1186.620 kb on + strand, within GFF2301 at 1186.621 kb on - strand, within GFF2301 at 1186.684 kb on - strand, within GFF2301 at 1186.684 kb on - strand, within GFF2301 at 1186.684 kb on - strand, within GFF2301 at 1187.150 kb on - strand at 1187.152 kb on - strand at 1187.168 kb on - strand at 1187.168 kb on - strand at 1187.548 kb on + strand, within GFF2302 at 1187.549 kb on - strand, within GFF2302 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1188.316 kb on - strand, within GFF2304 at 1188.316 kb on - strand, within GFF2304 at 1188.316 kb on - strand, within GFF2304 at 1188.316 kb on - strand, within GFF2304 at 1188.319 kb on + strand, within GFF2304 at 1188.319 kb on + strand, within GFF2304 at 1188.319 kb on + strand, within GFF2304 at 1188.320 kb on - strand, within GFF2304 at 1188.320 kb on - strand, within GFF2304 at 1188.454 kb on + strand at 1188.550 kb on + strand at 1188.550 kb on + strand at 1188.550 kb on + strand at 1188.550 kb on + strand at 1188.550 kb on + strand at 1188.551 kb on - strand at 1188.551 kb on - strand at 1188.551 kb on - strand at 1188.551 kb on - strand at 1188.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 1,186,174 - GFF2300 0.77 +1.2 1,186,174 - GFF2300 0.77 +0.4 1,186,344 + -0.0 1,186,344 + +0.2 1,186,344 + +1.1 1,186,345 - +1.0 1,186,345 - -0.6 1,186,566 + GFF2301 0.24 +0.4 1,186,620 + GFF2301 0.38 +0.4 1,186,621 - GFF2301 0.39 +0.1 1,186,684 - GFF2301 0.56 +0.0 1,186,684 - GFF2301 0.56 -0.2 1,186,684 - GFF2301 0.56 -1.7 1,187,150 - +1.4 1,187,152 - -0.4 1,187,168 - +0.5 1,187,168 - +0.5 1,187,548 + GFF2302 0.87 +0.1 1,187,549 - GFF2302 0.87 +0.3 1,187,814 + GFF2303 0.65 -0.6 1,187,814 + GFF2303 0.65 -0.8 1,187,814 + GFF2303 0.65 +0.3 1,187,814 + GFF2303 0.65 +1.0 1,187,814 + GFF2303 0.65 +0.2 1,187,814 + GFF2303 0.65 +0.1 1,187,814 + GFF2303 0.65 -0.9 1,187,814 + GFF2303 0.65 -0.2 1,187,815 - GFF2303 0.66 +0.2 1,187,815 - GFF2303 0.66 +0.1 1,187,815 - GFF2303 0.66 -0.5 1,187,815 - GFF2303 0.66 +0.4 1,187,815 - GFF2303 0.66 +0.1 1,187,815 - GFF2303 0.66 -0.3 1,187,815 - GFF2303 0.66 +0.2 1,188,316 - GFF2304 0.75 +0.4 1,188,316 - GFF2304 0.75 +0.1 1,188,316 - GFF2304 0.75 -0.0 1,188,316 - GFF2304 0.75 +0.2 1,188,319 + GFF2304 0.76 +0.1 1,188,319 + GFF2304 0.76 +2.0 1,188,319 + GFF2304 0.76 +0.4 1,188,320 - GFF2304 0.76 +0.2 1,188,320 - GFF2304 0.76 +0.6 1,188,454 + +0.0 1,188,550 + +0.6 1,188,550 + +0.2 1,188,550 + -0.7 1,188,550 + +1.0 1,188,550 + -0.2 1,188,551 - +0.3 1,188,551 - +0.3 1,188,551 - -0.5 1,188,551 - +1.0 1,188,551 - -0.0
Or see this region's nucleotide sequence