Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF228 and GFF229 are separated by 57 nucleotides GFF229 and GFF230 overlap by 26 nucleotides GFF230 and GFF231 are separated by 4 nucleotides GFF231 and GFF232 overlap by 4 nucleotides
GFF228 - Acetyltransferase (EC 2.3.1.-), at 250,709 to 251,230
GFF228
GFF229 - Rrf2 family transcriptional regulator, group III, at 251,288 to 251,761
GFF229
GFF230 - Thioredoxin reductase (EC 1.8.1.9), at 251,736 to 252,635
GFF230
GFF231 - probable DNA repair exonuclease, at 252,640 to 253,428
GFF231
GFF232 - Transcription regulator [contains diacylglycerol kinase catalytic domain], at 253,425 to 254,396
GFF232
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 250.744 kb on + strand at 250.744 kb on + strand at 251.066 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.272 kb on + strand at 251.285 kb on + strand at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.784 kb on + strand at 251.785 kb on - strand at 251.785 kb on - strand at 252.403 kb on + strand, within GFF230 at 252.854 kb on + strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 253.172 kb on + strand, within GFF231 at 253.209 kb on + strand, within GFF231
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 250,744 + -1.7 250,744 + -0.4 251,066 + GFF228 0.68 +0.3 251,126 + GFF228 0.80 +0.2 251,126 + GFF228 0.80 +0.9 251,272 + +0.2 251,285 + +0.4 251,522 + GFF229 0.49 -0.6 251,522 + GFF229 0.49 +0.2 251,522 + GFF229 0.49 +0.2 251,522 + GFF229 0.49 -0.2 251,784 + +0.5 251,785 - -1.2 251,785 - +0.3 252,403 + GFF230 0.74 -0.7 252,854 + GFF231 0.27 +0.1 252,855 - GFF231 0.27 -2.3 252,855 - GFF231 0.27 +0.2 252,855 - GFF231 0.27 +0.6 252,855 - GFF231 0.27 -0.1 252,855 - GFF231 0.27 +0.5 252,855 - GFF231 0.27 -0.2 252,855 - GFF231 0.27 +0.2 252,855 - GFF231 0.27 +0.4 253,172 + GFF231 0.67 -0.6 253,209 + GFF231 0.72 -1.5
Or see this region's nucleotide sequence