Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2092 and GFF2093 are separated by 25 nucleotides GFF2093 and GFF2094 are separated by 42 nucleotides
GFF2092 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 976,579 to 980,115
GFF2092
GFF2093 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 980,141 to 981,169
GFF2093
GFF2094 - TRAP-type C4-dicarboxylate transport system, large permease component, at 981,212 to 982,489
GFF2094
Position (kb) 980
981
982 Strain fitness (log2 ratio) -2
-1
0
1 at 979.226 kb on + strand, within GFF2092 at 979.226 kb on + strand, within GFF2092 at 979.226 kb on + strand, within GFF2092 at 979.227 kb on - strand, within GFF2092 at 979.227 kb on - strand, within GFF2092 at 979.229 kb on + strand, within GFF2092 at 979.229 kb on + strand, within GFF2092 at 979.419 kb on - strand, within GFF2092 at 979.419 kb on - strand, within GFF2092 at 979.419 kb on - strand, within GFF2092 at 980.042 kb on + strand at 980.410 kb on - strand, within GFF2093 at 980.425 kb on - strand, within GFF2093 at 980.446 kb on - strand, within GFF2093 at 980.749 kb on - strand, within GFF2093 at 980.749 kb on - strand, within GFF2093 at 980.805 kb on + strand, within GFF2093 at 980.805 kb on + strand, within GFF2093 at 981.424 kb on - strand, within GFF2094 at 981.424 kb on - strand, within GFF2094 at 981.750 kb on + strand, within GFF2094
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 979,226 + GFF2092 0.75 -0.7 979,226 + GFF2092 0.75 -0.2 979,226 + GFF2092 0.75 -0.1 979,227 - GFF2092 0.75 -0.4 979,227 - GFF2092 0.75 -0.1 979,229 + GFF2092 0.75 -0.0 979,229 + GFF2092 0.75 +0.1 979,419 - GFF2092 0.80 +0.4 979,419 - GFF2092 0.80 -0.0 979,419 - GFF2092 0.80 -0.4 980,042 + -0.2 980,410 - GFF2093 0.26 -0.2 980,425 - GFF2093 0.28 +0.7 980,446 - GFF2093 0.30 -1.0 980,749 - GFF2093 0.59 +0.8 980,749 - GFF2093 0.59 -1.9 980,805 + GFF2093 0.65 +0.8 980,805 + GFF2093 0.65 +0.7 981,424 - GFF2094 0.17 -0.0 981,424 - GFF2094 0.17 -0.8 981,750 + GFF2094 0.42 +0.0
Or see this region's nucleotide sequence