Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF208 and GFF209 are separated by 69 nucleotides GFF209 and GFF210 are separated by 15 nucleotides
GFF208 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 225,551 to 226,669
GFF208
GFF209 - Hypothetical protein with Rieske (2Fe-2S) region, at 226,739 to 227,761
GFF209
GFF210 - Adenosine deaminase (EC 3.5.4.4), at 227,777 to 228,784
GFF210
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1
2 at 225.884 kb on + strand, within GFF208 at 225.950 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.992 kb on + strand, within GFF208 at 225.992 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.319 kb on + strand, within GFF208 at 226.320 kb on - strand, within GFF208 at 226.368 kb on - strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.371 kb on - strand, within GFF208 at 226.371 kb on - strand, within GFF208 at 226.634 kb on + strand at 226.634 kb on + strand at 226.635 kb on - strand at 226.635 kb on - strand at 226.961 kb on + strand, within GFF209 at 226.962 kb on - strand, within GFF209 at 227.379 kb on - strand, within GFF209 at 227.418 kb on - strand, within GFF209 at 227.897 kb on + strand, within GFF210 at 227.898 kb on - strand, within GFF210 at 227.898 kb on - strand, within GFF210 at 227.898 kb on - strand, within GFF210 at 227.928 kb on - strand, within GFF210 at 227.928 kb on - strand, within GFF210 at 227.963 kb on + strand, within GFF210 at 227.963 kb on + strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 228.024 kb on - strand, within GFF210 at 228.024 kb on - strand, within GFF210 at 228.389 kb on + strand, within GFF210 at 228.618 kb on - strand, within GFF210 at 228.629 kb on + strand, within GFF210
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 225,884 + GFF208 0.30 -0.2 225,950 + GFF208 0.36 -0.2 225,977 + GFF208 0.38 +0.7 225,977 + GFF208 0.38 +1.1 225,977 + GFF208 0.38 +1.1 225,992 + GFF208 0.39 +0.3 225,992 + GFF208 0.39 -0.1 226,004 + GFF208 0.40 +0.4 226,004 + GFF208 0.40 -1.1 226,004 + GFF208 0.40 -0.6 226,319 + GFF208 0.69 +0.2 226,320 - GFF208 0.69 -0.5 226,368 - GFF208 0.73 +0.1 226,370 + GFF208 0.73 +2.4 226,370 + GFF208 0.73 +1.3 226,370 + GFF208 0.73 -0.1 226,370 + GFF208 0.73 -0.9 226,370 + GFF208 0.73 -1.5 226,371 - GFF208 0.73 -0.1 226,371 - GFF208 0.73 +0.9 226,634 + -0.6 226,634 + +0.2 226,635 - +0.3 226,635 - -0.9 226,961 + GFF209 0.22 +1.1 226,962 - GFF209 0.22 +0.5 227,379 - GFF209 0.63 +0.5 227,418 - GFF209 0.66 +1.0 227,897 + GFF210 0.12 +0.8 227,898 - GFF210 0.12 +1.7 227,898 - GFF210 0.12 -0.2 227,898 - GFF210 0.12 -1.2 227,928 - GFF210 0.15 -0.6 227,928 - GFF210 0.15 -1.3 227,963 + GFF210 0.18 +0.3 227,963 + GFF210 0.18 -0.4 227,964 - GFF210 0.19 +0.1 227,964 - GFF210 0.19 -0.0 227,964 - GFF210 0.19 +0.2 227,964 - GFF210 0.19 +0.7 227,964 - GFF210 0.19 -0.5 227,964 - GFF210 0.19 +0.9 227,964 - GFF210 0.19 -0.9 228,024 - GFF210 0.25 +0.4 228,024 - GFF210 0.25 -0.5 228,389 + GFF210 0.61 -0.5 228,618 - GFF210 0.83 -1.7 228,629 + GFF210 0.85 +0.3
Or see this region's nucleotide sequence