Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF206 and GFF207 are separated by 3 nucleotides GFF207 and GFF208 are separated by 86 nucleotides
GFF206 - Nucleoside ABC transporter, permease protein 1, at 223,485 to 224,540
GFF206
GFF207 - Nucleoside ABC transporter, permease protein 2, at 224,544 to 225,464
GFF207
GFF208 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 225,551 to 226,669
GFF208
Position (kb) 224
225
226 Strain fitness (log2 ratio) -1
0
1
2 at 223.653 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.944 kb on + strand, within GFF206 at 223.945 kb on - strand, within GFF206 at 224.004 kb on + strand, within GFF206 at 224.005 kb on - strand, within GFF206 at 224.139 kb on + strand, within GFF206 at 224.304 kb on + strand, within GFF206 at 224.304 kb on + strand, within GFF206 at 224.406 kb on + strand, within GFF206 at 224.406 kb on + strand, within GFF206 at 224.505 kb on - strand at 224.539 kb on - strand at 224.808 kb on + strand, within GFF207 at 224.871 kb on + strand, within GFF207 at 224.872 kb on - strand, within GFF207 at 224.872 kb on - strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.273 kb on + strand, within GFF207 at 225.274 kb on - strand, within GFF207 at 225.360 kb on + strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.462 kb on + strand at 225.463 kb on - strand at 225.692 kb on + strand, within GFF208 at 225.884 kb on + strand, within GFF208 at 225.950 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.992 kb on + strand, within GFF208 at 225.992 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.319 kb on + strand, within GFF208 at 226.320 kb on - strand, within GFF208 at 226.368 kb on - strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.371 kb on - strand, within GFF208 at 226.371 kb on - strand, within GFF208
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 223,653 + GFF206 0.16 -0.3 223,761 + GFF206 0.26 +0.3 223,761 + GFF206 0.26 +0.0 223,761 + GFF206 0.26 -1.0 223,762 - GFF206 0.26 +1.9 223,762 - GFF206 0.26 +0.5 223,762 - GFF206 0.26 +0.4 223,762 - GFF206 0.26 -0.1 223,944 + GFF206 0.43 -0.4 223,945 - GFF206 0.44 +0.4 224,004 + GFF206 0.49 -0.2 224,005 - GFF206 0.49 +0.5 224,139 + GFF206 0.62 -1.2 224,304 + GFF206 0.78 -0.1 224,304 + GFF206 0.78 +0.2 224,406 + GFF206 0.87 +0.5 224,406 + GFF206 0.87 -0.1 224,505 - +0.9 224,539 - +1.1 224,808 + GFF207 0.29 -0.2 224,871 + GFF207 0.36 +1.1 224,872 - GFF207 0.36 -0.0 224,872 - GFF207 0.36 -0.2 224,973 + GFF207 0.47 +0.1 224,973 + GFF207 0.47 -0.3 224,973 + GFF207 0.47 -0.9 224,973 + GFF207 0.47 +0.3 224,974 - GFF207 0.47 +0.9 224,974 - GFF207 0.47 +0.7 224,974 - GFF207 0.47 +0.8 224,974 - GFF207 0.47 +0.6 224,974 - GFF207 0.47 +1.4 225,153 + GFF207 0.66 +0.2 225,153 + GFF207 0.66 +0.0 225,153 + GFF207 0.66 +0.3 225,273 + GFF207 0.79 +2.1 225,274 - GFF207 0.79 +0.3 225,360 + GFF207 0.89 -0.8 225,361 - GFF207 0.89 +0.5 225,361 - GFF207 0.89 -0.4 225,361 - GFF207 0.89 +0.6 225,462 + +0.3 225,463 - +1.1 225,692 + GFF208 0.13 +0.7 225,884 + GFF208 0.30 -0.2 225,950 + GFF208 0.36 -0.2 225,977 + GFF208 0.38 +0.7 225,977 + GFF208 0.38 +1.1 225,977 + GFF208 0.38 +1.1 225,992 + GFF208 0.39 +0.3 225,992 + GFF208 0.39 -0.1 226,004 + GFF208 0.40 +0.4 226,004 + GFF208 0.40 -1.1 226,004 + GFF208 0.40 -0.6 226,319 + GFF208 0.69 +0.2 226,320 - GFF208 0.69 -0.5 226,368 - GFF208 0.73 +0.1 226,370 + GFF208 0.73 +2.4 226,370 + GFF208 0.73 +1.3 226,370 + GFF208 0.73 -0.1 226,370 + GFF208 0.73 -0.9 226,370 + GFF208 0.73 -1.5 226,371 - GFF208 0.73 -0.1 226,371 - GFF208 0.73 +0.9
Or see this region's nucleotide sequence