Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2027

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2026 and GFF2027 are separated by 492 nucleotidesGFF2027 and GFF2028 are separated by 34 nucleotides GFF2026 - hypothetical protein, at 905,197 to 905,433 GFF2026 GFF2027 - hypothetical protein, at 905,926 to 906,678 GFF2027 GFF2028 - Glutamine synthetase type I (EC 6.3.1.2), at 906,713 to 908,056 GFF2028 Position (kb) 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1at 904.939 kb on - strandat 904.967 kb on - strandat 904.967 kb on - strandat 905.300 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.345 kb on + strand, within GFF2026at 905.345 kb on + strand, within GFF2026at 905.531 kb on + strandat 905.532 kb on - strandat 905.725 kb on + strandat 905.725 kb on + strandat 905.726 kb on - strandat 905.726 kb on - strandat 905.805 kb on + strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 906.110 kb on + strand, within GFF2027at 906.110 kb on + strand, within GFF2027at 906.111 kb on - strand, within GFF2027at 906.159 kb on - strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.507 kb on - strand, within GFF2027at 906.507 kb on - strand, within GFF2027at 906.714 kb on + strandat 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.925 kb on - strand, within GFF2028at 906.925 kb on - strand, within GFF2028at 907.011 kb on + strand, within GFF2028at 907.011 kb on + strand, within GFF2028at 907.011 kb on + strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.416 kb on + strand, within GFF2028at 907.452 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.465 kb on - strand, within GFF2028at 907.465 kb on - strand, within GFF2028at 907.578 kb on + strand, within GFF2028at 907.578 kb on + strand, within GFF2028at 907.579 kb on - strand, within GFF2028at 907.579 kb on - strand, within GFF2028

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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904,939 - -0.2
904,967 - -0.0
904,967 - +1.0
905,300 + GFF2026 0.43 -0.0
905,305 + GFF2026 0.46 +0.0
905,305 + GFF2026 0.46 -0.3
905,305 + GFF2026 0.46 -0.1
905,305 + GFF2026 0.46 -0.4
905,305 + GFF2026 0.46 -0.9
905,306 - GFF2026 0.46 +0.0
905,306 - GFF2026 0.46 +1.0
905,306 - GFF2026 0.46 -1.2
905,306 - GFF2026 0.46 -0.6
905,306 - GFF2026 0.46 +0.5
905,345 + GFF2026 0.62 -0.7
905,345 + GFF2026 0.62 -0.2
905,531 + +0.5
905,532 - -0.5
905,725 + -1.5
905,725 + +1.0
905,726 - -1.5
905,726 - -0.1
905,805 + -0.0
905,806 - +0.4
905,806 - +0.2
905,806 - +0.2
905,806 - +0.4
906,110 + GFF2027 0.24 -1.3
906,110 + GFF2027 0.24 -3.6
906,111 - GFF2027 0.25 -1.6
906,159 - GFF2027 0.31 -0.6
906,194 + GFF2027 0.36 -0.0
906,194 + GFF2027 0.36 -3.2
906,194 + GFF2027 0.36 -3.2
906,194 + GFF2027 0.36 -3.2
906,194 + GFF2027 0.36 -1.8
906,195 - GFF2027 0.36 -2.0
906,195 - GFF2027 0.36 -1.3
906,195 - GFF2027 0.36 -1.8
906,195 - GFF2027 0.36 -2.1
906,195 - GFF2027 0.36 -2.4
906,195 - GFF2027 0.36 -0.6
906,195 - GFF2027 0.36 -1.0
906,195 - GFF2027 0.36 -2.3
906,507 - GFF2027 0.77 -2.0
906,507 - GFF2027 0.77 -1.7
906,714 + -0.3
906,924 + GFF2028 0.16 -0.9
906,924 + GFF2028 0.16 -1.0
906,924 + GFF2028 0.16 -0.6
906,924 + GFF2028 0.16 +1.0
906,924 + GFF2028 0.16 -2.0
906,924 + GFF2028 0.16 +0.4
906,924 + GFF2028 0.16 +0.1
906,925 - GFF2028 0.16 +0.1
906,925 - GFF2028 0.16 -0.2
907,011 + GFF2028 0.22 -0.1
907,011 + GFF2028 0.22 -0.1
907,011 + GFF2028 0.22 -1.2
907,012 - GFF2028 0.22 +0.1
907,012 - GFF2028 0.22 -0.2
907,012 - GFF2028 0.22 -0.2
907,012 - GFF2028 0.22 +0.2
907,158 + GFF2028 0.33 +0.7
907,158 + GFF2028 0.33 -0.4
907,158 + GFF2028 0.33 -0.4
907,158 + GFF2028 0.33 -0.4
907,158 + GFF2028 0.33 +0.7
907,158 + GFF2028 0.33 +1.0
907,158 + GFF2028 0.33 +0.4
907,158 + GFF2028 0.33 -0.2
907,159 - GFF2028 0.33 +0.1
907,159 - GFF2028 0.33 -1.0
907,159 - GFF2028 0.33 +0.5
907,159 - GFF2028 0.33 -0.7
907,416 + GFF2028 0.52 -0.2
907,452 + GFF2028 0.55 +0.7
907,464 + GFF2028 0.56 +0.2
907,464 + GFF2028 0.56 -0.0
907,464 + GFF2028 0.56 -0.3
907,464 + GFF2028 0.56 +0.6
907,464 + GFF2028 0.56 +0.5
907,464 + GFF2028 0.56 +0.5
907,465 - GFF2028 0.56 -0.0
907,465 - GFF2028 0.56 +0.1
907,578 + GFF2028 0.64 +0.4
907,578 + GFF2028 0.64 -0.5
907,579 - GFF2028 0.64 +0.3
907,579 - GFF2028 0.64 -0.2

Or see this region's nucleotide sequence