Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2002 and GFF2003 are separated by 12 nucleotides GFF2003 and GFF2004 are separated by 74 nucleotides GFF2004 and GFF2005 are separated by 2 nucleotides GFF2005 and GFF2006 are separated by 226 nucleotides GFF2006 and GFF2007 overlap by 18 nucleotides GFF2007 and GFF2008 overlap by 45 nucleotides
GFF2002 - uncharacterized domain 1, at 879,484 to 879,906
GFF2002
GFF2003 - hypothetical protein, at 879,919 to 880,296
GFF2003
GFF2004 - hypothetical protein, at 880,371 to 880,721
GFF2004
GFF2005 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 880,724 to 881,290
GFF2005
GFF2006 - hypothetical protein, at 881,517 to 881,717
GFF2006
GFF2007 - hypothetical protein, at 881,700 to 881,828
GFF2007
GFF2008 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 881,784 to 883,208
GFF2008
Position (kb) 880
881
882 Strain fitness (log2 ratio) -1
0
1
2
3 at 879.904 kb on + strand at 879.905 kb on - strand at 879.920 kb on + strand at 879.989 kb on + strand, within GFF2003 at 879.989 kb on + strand, within GFF2003 at 879.989 kb on + strand, within GFF2003 at 879.990 kb on - strand, within GFF2003 at 879.990 kb on - strand, within GFF2003 at 880.085 kb on + strand, within GFF2003 at 880.085 kb on + strand, within GFF2003 at 880.085 kb on + strand, within GFF2003 at 880.085 kb on + strand, within GFF2003 at 880.086 kb on - strand, within GFF2003 at 880.086 kb on - strand, within GFF2003 at 880.086 kb on - strand, within GFF2003 at 880.086 kb on - strand, within GFF2003 at 880.086 kb on - strand, within GFF2003 at 880.086 kb on - strand, within GFF2003 at 880.151 kb on + strand, within GFF2003 at 880.151 kb on + strand, within GFF2003 at 880.151 kb on + strand, within GFF2003 at 880.151 kb on + strand, within GFF2003 at 880.151 kb on + strand, within GFF2003 at 880.152 kb on - strand, within GFF2003 at 880.152 kb on - strand, within GFF2003 at 880.152 kb on - strand, within GFF2003 at 880.152 kb on - strand, within GFF2003 at 880.328 kb on + strand at 880.328 kb on + strand at 880.329 kb on - strand at 880.507 kb on + strand, within GFF2004 at 880.507 kb on + strand, within GFF2004 at 880.507 kb on + strand, within GFF2004 at 880.508 kb on - strand, within GFF2004 at 880.508 kb on - strand, within GFF2004 at 880.508 kb on - strand, within GFF2004 at 880.508 kb on - strand, within GFF2004 at 880.555 kb on + strand, within GFF2004 at 880.555 kb on + strand, within GFF2004 at 880.600 kb on + strand, within GFF2004 at 880.600 kb on + strand, within GFF2004 at 880.601 kb on - strand, within GFF2004 at 880.765 kb on - strand at 880.765 kb on - strand at 880.839 kb on + strand, within GFF2005 at 880.840 kb on - strand, within GFF2005 at 880.840 kb on - strand, within GFF2005 at 881.100 kb on + strand, within GFF2005 at 881.453 kb on + strand at 881.453 kb on + strand at 881.453 kb on + strand at 881.453 kb on + strand at 881.454 kb on - strand at 881.454 kb on - strand at 881.454 kb on - strand at 881.701 kb on + strand at 881.701 kb on + strand at 881.701 kb on + strand at 881.702 kb on - strand at 881.741 kb on + strand, within GFF2007 at 881.741 kb on + strand, within GFF2007 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.938 kb on - strand, within GFF2008
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 879,904 + +0.1 879,905 - +0.1 879,920 + +1.0 879,989 + GFF2003 0.19 +0.6 879,989 + GFF2003 0.19 +0.0 879,989 + GFF2003 0.19 +0.5 879,990 - GFF2003 0.19 +1.0 879,990 - GFF2003 0.19 -0.3 880,085 + GFF2003 0.44 -0.3 880,085 + GFF2003 0.44 +1.0 880,085 + GFF2003 0.44 +0.6 880,085 + GFF2003 0.44 +0.4 880,086 - GFF2003 0.44 +1.7 880,086 - GFF2003 0.44 +0.2 880,086 - GFF2003 0.44 +0.3 880,086 - GFF2003 0.44 +0.4 880,086 - GFF2003 0.44 -0.1 880,086 - GFF2003 0.44 -0.1 880,151 + GFF2003 0.61 +0.1 880,151 + GFF2003 0.61 +1.5 880,151 + GFF2003 0.61 +0.4 880,151 + GFF2003 0.61 -0.4 880,151 + GFF2003 0.61 +0.1 880,152 - GFF2003 0.62 +0.2 880,152 - GFF2003 0.62 +0.1 880,152 - GFF2003 0.62 +0.6 880,152 - GFF2003 0.62 +0.3 880,328 + +0.1 880,328 + +1.0 880,329 - +1.0 880,507 + GFF2004 0.39 -0.3 880,507 + GFF2004 0.39 +0.9 880,507 + GFF2004 0.39 -0.1 880,508 - GFF2004 0.39 +0.1 880,508 - GFF2004 0.39 +0.4 880,508 - GFF2004 0.39 +0.0 880,508 - GFF2004 0.39 +0.7 880,555 + GFF2004 0.52 +0.3 880,555 + GFF2004 0.52 -0.0 880,600 + GFF2004 0.65 -0.8 880,600 + GFF2004 0.65 +2.0 880,601 - GFF2004 0.66 -0.3 880,765 - +1.3 880,765 - +0.4 880,839 + GFF2005 0.20 +1.1 880,840 - GFF2005 0.20 +0.8 880,840 - GFF2005 0.20 +0.7 881,100 + GFF2005 0.66 +0.7 881,453 + +3.6 881,453 + -0.3 881,453 + +0.5 881,453 + -0.2 881,454 - +0.2 881,454 - -0.2 881,454 - +0.4 881,701 + +0.3 881,701 + +0.4 881,701 + -0.1 881,702 - -1.3 881,741 + GFF2007 0.32 -0.7 881,741 + GFF2007 0.32 -0.1 881,937 + GFF2008 0.11 +0.1 881,937 + GFF2008 0.11 +0.4 881,937 + GFF2008 0.11 -0.6 881,937 + GFF2008 0.11 +0.1 881,938 - GFF2008 0.11 -0.4
Or see this region's nucleotide sequence