Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1979 and GFF1980 are separated by 21 nucleotides GFF1980 and GFF1981 overlap by 4 nucleotides GFF1981 and GFF1982 are separated by 23 nucleotides GFF1982 and GFF1983 are separated by 86 nucleotides
GFF1979 - Beta-lactamase class C and other penicillin binding proteins, at 854,374 to 855,615
GFF1979
GFF1980 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 855,637 to 856,431
GFF1980
GFF1981 - FIG00441354: hypothetical protein, at 856,428 to 857,543
GFF1981
GFF1982 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 857,567 to 858,088
GFF1982
GFF1983 - Transcriptional regulator, MarR family, at 858,175 to 858,606
GFF1983
Position (kb) 856
857
858 Strain fitness (log2 ratio) -2
-1
0
1 at 855.476 kb on + strand, within GFF1979 at 855.893 kb on + strand, within GFF1980 at 856.259 kb on + strand, within GFF1980 at 856.259 kb on + strand, within GFF1980 at 856.259 kb on + strand, within GFF1980 at 856.260 kb on - strand, within GFF1980 at 856.286 kb on + strand, within GFF1980 at 856.484 kb on + strand at 856.555 kb on + strand, within GFF1981 at 856.556 kb on - strand, within GFF1981 at 856.561 kb on - strand, within GFF1981 at 856.675 kb on + strand, within GFF1981 at 856.676 kb on - strand, within GFF1981 at 856.676 kb on - strand, within GFF1981 at 856.795 kb on + strand, within GFF1981 at 857.101 kb on + strand, within GFF1981 at 857.102 kb on - strand, within GFF1981 at 857.399 kb on + strand, within GFF1981 at 857.399 kb on + strand, within GFF1981 at 857.400 kb on - strand, within GFF1981 at 857.400 kb on - strand, within GFF1981 at 857.461 kb on + strand at 857.538 kb on - strand at 857.555 kb on + strand at 857.686 kb on + strand, within GFF1982 at 857.687 kb on - strand, within GFF1982 at 857.810 kb on + strand, within GFF1982 at 857.810 kb on + strand, within GFF1982 at 857.811 kb on - strand, within GFF1982 at 857.811 kb on - strand, within GFF1982 at 857.972 kb on + strand, within GFF1982 at 857.972 kb on + strand, within GFF1982 at 857.973 kb on - strand, within GFF1982 at 858.068 kb on + strand at 858.208 kb on + strand at 858.208 kb on + strand at 858.208 kb on + strand at 858.209 kb on - strand at 858.209 kb on - strand at 858.209 kb on - strand at 858.217 kb on + strand at 858.218 kb on - strand at 858.218 kb on - strand at 858.218 kb on - strand at 858.494 kb on + strand, within GFF1983 at 858.494 kb on + strand, within GFF1983
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 855,476 + GFF1979 0.89 +0.3 855,893 + GFF1980 0.32 -0.4 856,259 + GFF1980 0.78 -0.3 856,259 + GFF1980 0.78 -1.8 856,259 + GFF1980 0.78 -0.1 856,260 - GFF1980 0.78 +0.2 856,286 + GFF1980 0.82 +0.6 856,484 + -0.2 856,555 + GFF1981 0.11 +0.3 856,556 - GFF1981 0.11 +0.3 856,561 - GFF1981 0.12 +0.5 856,675 + GFF1981 0.22 +0.3 856,676 - GFF1981 0.22 +0.4 856,676 - GFF1981 0.22 +0.7 856,795 + GFF1981 0.33 +0.0 857,101 + GFF1981 0.60 -0.2 857,102 - GFF1981 0.60 +0.4 857,399 + GFF1981 0.87 +0.0 857,399 + GFF1981 0.87 -0.3 857,400 - GFF1981 0.87 +0.8 857,400 - GFF1981 0.87 +0.1 857,461 + +0.1 857,538 - -0.7 857,555 + +0.2 857,686 + GFF1982 0.23 -0.8 857,687 - GFF1982 0.23 +1.0 857,810 + GFF1982 0.47 +0.7 857,810 + GFF1982 0.47 -2.0 857,811 - GFF1982 0.47 -0.2 857,811 - GFF1982 0.47 +1.2 857,972 + GFF1982 0.78 +0.4 857,972 + GFF1982 0.78 -0.4 857,973 - GFF1982 0.78 +0.3 858,068 + +0.2 858,208 + +0.1 858,208 + +0.6 858,208 + +0.4 858,209 - +0.9 858,209 - +0.2 858,209 - +0.4 858,217 + +0.4 858,218 - -0.3 858,218 - -0.8 858,218 - -0.1 858,494 + GFF1983 0.74 +0.5 858,494 + GFF1983 0.74 +1.0
Or see this region's nucleotide sequence