Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1944 and GFF1945 are separated by 42 nucleotides GFF1945 and GFF1946 are separated by 49 nucleotides GFF1946 and GFF1947 are separated by 1 nucleotides
GFF1944 - Cyanate hydratase (EC 4.2.1.104), at 817,691 to 818,134
GFF1944
GFF1945 - Cyanate ABC transporter, ATP-binding protein, at 818,177 to 818,974
GFF1945
GFF1946 - Cyanate ABC transporter, permease protein, at 819,024 to 819,887
GFF1946
GFF1947 - Cyanate ABC transporter, substrate binding protein, at 819,889 to 821,310
GFF1947
Position (kb) 819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 818.232 kb on + strand at 818.232 kb on + strand at 818.232 kb on + strand at 818.232 kb on + strand at 818.235 kb on + strand at 818.236 kb on - strand at 818.236 kb on - strand at 818.236 kb on - strand at 818.236 kb on - strand at 818.319 kb on + strand, within GFF1945 at 818.931 kb on + strand at 819.035 kb on - strand at 819.035 kb on - strand at 819.157 kb on + strand, within GFF1946 at 819.158 kb on - strand, within GFF1946 at 819.433 kb on + strand, within GFF1946 at 819.641 kb on - strand, within GFF1946 at 819.641 kb on - strand, within GFF1946 at 819.927 kb on - strand at 819.927 kb on - strand at 819.981 kb on - strand at 820.044 kb on - strand, within GFF1947 at 820.070 kb on + strand, within GFF1947 at 820.251 kb on - strand, within GFF1947 at 820.251 kb on - strand, within GFF1947 at 820.335 kb on - strand, within GFF1947 at 820.592 kb on + strand, within GFF1947 at 820.592 kb on + strand, within GFF1947 at 820.593 kb on - strand, within GFF1947 at 820.595 kb on + strand, within GFF1947 at 820.595 kb on + strand, within GFF1947 at 820.623 kb on - strand, within GFF1947 at 820.811 kb on + strand, within GFF1947 at 820.811 kb on + strand, within GFF1947 at 820.812 kb on - strand, within GFF1947
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 818,232 + -0.1 818,232 + -0.1 818,232 + +0.3 818,232 + -0.0 818,235 + +1.0 818,236 - +0.1 818,236 - +1.0 818,236 - +1.8 818,236 - -0.2 818,319 + GFF1945 0.18 -0.5 818,931 + -0.1 819,035 - +0.4 819,035 - -0.7 819,157 + GFF1946 0.15 -0.0 819,158 - GFF1946 0.16 -1.9 819,433 + GFF1946 0.47 +0.4 819,641 - GFF1946 0.71 -1.2 819,641 - GFF1946 0.71 -1.1 819,927 - +0.4 819,927 - -0.9 819,981 - +0.5 820,044 - GFF1947 0.11 +0.0 820,070 + GFF1947 0.13 -0.2 820,251 - GFF1947 0.25 +1.0 820,251 - GFF1947 0.25 -0.2 820,335 - GFF1947 0.31 -0.6 820,592 + GFF1947 0.49 -0.6 820,592 + GFF1947 0.49 -0.1 820,593 - GFF1947 0.50 +0.0 820,595 + GFF1947 0.50 -0.4 820,595 + GFF1947 0.50 +0.1 820,623 - GFF1947 0.52 -1.3 820,811 + GFF1947 0.65 +2.0 820,811 + GFF1947 0.65 -0.4 820,812 - GFF1947 0.65 -0.6
Or see this region's nucleotide sequence