Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF190 and GFF191 are separated by 121 nucleotides GFF191 and GFF192 are separated by 191 nucleotides
GFF190 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 202,858 to 204,537
GFF190
GFF191 - Transcriptional regulator ligR, LysR family, at 204,659 to 205,576
GFF191
GFF192 - Outer membrane protein (porin), at 205,768 to 206,730
GFF192
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.888 kb on + strand, within GFF190 at 203.888 kb on + strand, within GFF190 at 203.930 kb on + strand, within GFF190 at 203.930 kb on + strand, within GFF190 at 203.930 kb on + strand, within GFF190 at 203.931 kb on - strand, within GFF190 at 204.108 kb on - strand, within GFF190 at 204.108 kb on - strand, within GFF190 at 204.560 kb on + strand at 204.561 kb on - strand at 204.561 kb on - strand at 204.561 kb on - strand at 204.561 kb on - strand at 204.581 kb on + strand at 204.582 kb on - strand at 204.628 kb on + strand at 204.944 kb on + strand, within GFF191 at 204.945 kb on - strand, within GFF191 at 205.089 kb on - strand, within GFF191 at 205.089 kb on - strand, within GFF191 at 205.640 kb on + strand at 205.640 kb on + strand at 205.681 kb on + strand at 205.682 kb on - strand at 206.162 kb on - strand, within GFF192 at 206.227 kb on + strand, within GFF192 at 206.228 kb on - strand, within GFF192 at 206.329 kb on + strand, within GFF192 at 206.365 kb on + strand, within GFF192 at 206.426 kb on - strand, within GFF192 at 206.426 kb on - strand, within GFF192 at 206.543 kb on - strand, within GFF192 at 206.552 kb on - strand, within GFF192
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 203,888 + GFF190 0.61 +0.7 203,888 + GFF190 0.61 +0.7 203,930 + GFF190 0.64 +0.7 203,930 + GFF190 0.64 +2.6 203,930 + GFF190 0.64 +0.1 203,931 - GFF190 0.64 +1.3 204,108 - GFF190 0.74 +0.0 204,108 - GFF190 0.74 -1.4 204,560 + +1.6 204,561 - -0.2 204,561 - -2.7 204,561 - +0.4 204,561 - +0.1 204,581 + +0.6 204,582 - +0.1 204,628 + +0.0 204,944 + GFF191 0.31 +0.1 204,945 - GFF191 0.31 -0.9 205,089 - GFF191 0.47 -0.3 205,089 - GFF191 0.47 +1.1 205,640 + +0.0 205,640 + -1.1 205,681 + +0.1 205,682 - -0.1 206,162 - GFF192 0.41 +1.1 206,227 + GFF192 0.48 -0.5 206,228 - GFF192 0.48 -0.1 206,329 + GFF192 0.58 +0.8 206,365 + GFF192 0.62 +0.6 206,426 - GFF192 0.68 +0.9 206,426 - GFF192 0.68 +0.3 206,543 - GFF192 0.80 +0.4 206,552 - GFF192 0.81 +0.4
Or see this region's nucleotide sequence