Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1813

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1812 and GFF1813 are separated by 17 nucleotidesGFF1813 and GFF1814 are separated by 3 nucleotidesGFF1814 and GFF1815 are separated by 5 nucleotides GFF1812 - Porphobilinogen synthase (EC 4.2.1.24), at 679,768 to 680,769 GFF1812 GFF1813 - Magnesium and cobalt transport protein CorA, at 680,787 to 681,896 GFF1813 GFF1814 - Glutathione S-transferase (EC 2.5.1.18), at 681,900 to 682,550 GFF1814 GFF1815 - amidohydrolase 2, at 682,556 to 683,449 GFF1815 Position (kb) 680 681 682Strain fitness (log2 ratio) -1 0 1 2 3at 680.824 kb on - strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.862 kb on + strandat 680.863 kb on - strandat 680.863 kb on - strandat 680.863 kb on - strandat 680.863 kb on - strandat 680.863 kb on - strandat 680.863 kb on - strandat 681.000 kb on + strand, within GFF1813at 681.001 kb on - strand, within GFF1813at 681.001 kb on - strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.018 kb on + strand, within GFF1813at 681.219 kb on + strand, within GFF1813at 681.220 kb on - strand, within GFF1813at 681.334 kb on - strand, within GFF1813at 681.873 kb on + strandat 681.874 kb on - strandat 681.874 kb on - strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.902 kb on - strandat 681.902 kb on - strandat 681.902 kb on - strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.908 kb on - strandat 681.908 kb on - strandat 681.908 kb on - strandat 681.976 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.271 kb on - strand, within GFF1814at 682.271 kb on - strand, within GFF1814at 682.363 kb on + strand, within GFF1814at 682.363 kb on + strand, within GFF1814at 682.364 kb on - strand, within GFF1814at 682.423 kb on + strand, within GFF1814at 682.474 kb on + strand, within GFF1814at 682.474 kb on + strand, within GFF1814at 682.475 kb on - strand, within GFF1814at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.732 kb on - strand, within GFF1815

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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680,824 - -0.6
680,862 + +1.0
680,862 + +3.4
680,862 + -0.5
680,862 + -1.0
680,862 + -0.5
680,862 + -0.4
680,862 + +0.5
680,862 + -0.6
680,862 + +1.0
680,863 - -0.2
680,863 - +0.1
680,863 - +0.0
680,863 - -0.6
680,863 - -0.5
680,863 - +0.4
681,000 + GFF1813 0.19 -0.4
681,001 - GFF1813 0.19 +0.2
681,001 - GFF1813 0.19 +0.1
681,006 + GFF1813 0.20 +1.7
681,006 + GFF1813 0.20 +0.5
681,006 + GFF1813 0.20 +0.2
681,006 + GFF1813 0.20 -1.5
681,006 + GFF1813 0.20 +0.0
681,007 - GFF1813 0.20 -0.2
681,007 - GFF1813 0.20 +0.0
681,007 - GFF1813 0.20 +0.0
681,007 - GFF1813 0.20 +0.7
681,007 - GFF1813 0.20 +0.8
681,007 - GFF1813 0.20 +0.4
681,007 - GFF1813 0.20 -0.8
681,018 + GFF1813 0.21 +0.2
681,219 + GFF1813 0.39 -0.3
681,220 - GFF1813 0.39 +0.8
681,334 - GFF1813 0.49 -0.8
681,873 + +0.2
681,874 - +0.2
681,874 - +0.9
681,901 + -0.5
681,901 + +0.3
681,901 + -0.4
681,901 + -0.9
681,902 - -0.1
681,902 - -0.3
681,902 - -0.4
681,907 + -0.1
681,907 + -0.1
681,907 + -1.3
681,907 + -0.8
681,907 + -0.4
681,908 - +1.3
681,908 - +0.7
681,908 - +0.2
681,976 + GFF1814 0.12 +2.2
682,051 + GFF1814 0.23 +0.0
682,051 + GFF1814 0.23 +0.0
682,051 + GFF1814 0.23 +0.4
682,051 + GFF1814 0.23 +1.3
682,051 + GFF1814 0.23 -0.1
682,051 + GFF1814 0.23 +0.1
682,051 + GFF1814 0.23 +0.3
682,052 - GFF1814 0.23 +0.2
682,052 - GFF1814 0.23 +0.3
682,052 - GFF1814 0.23 -0.3
682,052 - GFF1814 0.23 +1.1
682,052 - GFF1814 0.23 +0.6
682,052 - GFF1814 0.23 -1.6
682,052 - GFF1814 0.23 +0.7
682,052 - GFF1814 0.23 +0.5
682,052 - GFF1814 0.23 -0.8
682,219 + GFF1814 0.49 -0.0
682,219 + GFF1814 0.49 +0.9
682,219 + GFF1814 0.49 +0.4
682,219 - GFF1814 0.49 +0.4
682,220 - GFF1814 0.49 -0.5
682,220 - GFF1814 0.49 +0.0
682,220 - GFF1814 0.49 -0.3
682,220 - GFF1814 0.49 -0.0
682,220 - GFF1814 0.49 -0.3
682,270 + GFF1814 0.57 -0.6
682,270 + GFF1814 0.57 +0.7
682,270 + GFF1814 0.57 -0.3
682,270 + GFF1814 0.57 -1.0
682,271 - GFF1814 0.57 -0.1
682,271 - GFF1814 0.57 +0.4
682,363 + GFF1814 0.71 -0.6
682,363 + GFF1814 0.71 +0.3
682,364 - GFF1814 0.71 -0.2
682,423 + GFF1814 0.80 +0.7
682,474 + GFF1814 0.88 +0.6
682,474 + GFF1814 0.88 +1.3
682,475 - GFF1814 0.88 +0.6
682,674 + GFF1815 0.13 +0.9
682,674 + GFF1815 0.13 +1.8
682,674 + GFF1815 0.13 -0.4
682,675 - GFF1815 0.13 -0.2
682,675 - GFF1815 0.13 +0.0
682,731 + GFF1815 0.20 -0.1
682,731 + GFF1815 0.20 +1.3
682,731 + GFF1815 0.20 +0.3
682,732 - GFF1815 0.20 -0.3

Or see this region's nucleotide sequence