Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1771 and GFF1772 overlap by 4 nucleotides GFF1772 and GFF1773 are separated by 141 nucleotides GFF1773 and GFF1774 are separated by 28 nucleotides GFF1774 and GFF1775 are separated by 339 nucleotides
GFF1771 - hypothetical protein, at 637,605 to 638,012
GFF1771
GFF1772 - FOG: GGDEF domain, at 638,009 to 638,512
GFF1772
GFF1773 - SoxH protein, homolog, at 638,654 to 639,619
GFF1773
GFF1774 - hypothetical protein, at 639,648 to 640,067
GFF1774
GFF1775 - hypothetical protein, at 640,407 to 641,333
GFF1775
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.184 kb on + strand, within GFF1772 at 638.184 kb on + strand, within GFF1772 at 638.184 kb on + strand, within GFF1772 at 638.387 kb on + strand, within GFF1772 at 638.575 kb on + strand at 638.575 kb on + strand at 638.576 kb on - strand at 638.576 kb on - strand at 638.604 kb on + strand at 638.604 kb on + strand at 638.604 kb on + strand at 638.605 kb on - strand at 638.605 kb on - strand at 638.605 kb on - strand at 638.605 kb on - strand at 638.606 kb on + strand at 638.606 kb on + strand at 638.611 kb on - strand at 638.619 kb on + strand at 638.620 kb on + strand at 638.622 kb on + strand at 638.622 kb on + strand at 638.622 kb on + strand at 638.623 kb on - strand at 638.623 kb on - strand at 638.623 kb on - strand at 638.623 kb on - strand at 638.639 kb on + strand at 638.639 kb on + strand at 638.639 kb on + strand at 638.639 kb on + strand at 638.639 kb on + strand at 638.640 kb on - strand at 638.640 kb on - strand at 638.640 kb on - strand at 638.780 kb on + strand, within GFF1773 at 638.783 kb on + strand, within GFF1773 at 638.783 kb on + strand, within GFF1773 at 638.783 kb on + strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.972 kb on + strand, within GFF1773 at 638.973 kb on - strand, within GFF1773 at 638.973 kb on - strand, within GFF1773 at 638.990 kb on + strand, within GFF1773 at 638.990 kb on + strand, within GFF1773 at 638.990 kb on + strand, within GFF1773 at 638.991 kb on - strand, within GFF1773 at 638.991 kb on - strand, within GFF1773 at 638.991 kb on - strand, within GFF1773 at 639.053 kb on + strand, within GFF1773 at 639.053 kb on + strand, within GFF1773 at 639.053 kb on + strand, within GFF1773 at 639.054 kb on - strand, within GFF1773 at 639.177 kb on - strand, within GFF1773 at 639.440 kb on + strand, within GFF1773 at 639.441 kb on - strand, within GFF1773 at 639.441 kb on - strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.507 kb on - strand, within GFF1773 at 639.575 kb on + strand at 639.575 kb on + strand at 639.576 kb on - strand at 639.576 kb on - strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.618 kb on - strand at 639.618 kb on - strand at 639.725 kb on - strand, within GFF1774 at 639.996 kb on + strand, within GFF1774 at 639.996 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.001 kb on - strand, within GFF1774
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 638,184 + GFF1772 0.35 -0.3 638,184 + GFF1772 0.35 -0.1 638,184 + GFF1772 0.35 -0.0 638,387 + GFF1772 0.75 -2.4 638,575 + +0.1 638,575 + -0.4 638,576 - +0.0 638,576 - -2.3 638,604 + -0.7 638,604 + -1.3 638,604 + +0.5 638,605 - +0.8 638,605 - +0.0 638,605 - +0.9 638,605 - +0.3 638,606 + +0.4 638,606 + +0.0 638,611 - +0.3 638,619 + +0.8 638,620 + +1.2 638,622 + -0.5 638,622 + -0.3 638,622 + +0.3 638,623 - +0.1 638,623 - -0.1 638,623 - +0.2 638,623 - +0.2 638,639 + +0.2 638,639 + +0.5 638,639 + -0.4 638,639 + +1.0 638,639 + +1.9 638,640 - +0.0 638,640 - +0.4 638,640 - -0.3 638,780 + GFF1773 0.13 +0.2 638,783 + GFF1773 0.13 +0.1 638,783 + GFF1773 0.13 -0.7 638,783 + GFF1773 0.13 +0.5 638,784 - GFF1773 0.13 +0.2 638,784 - GFF1773 0.13 +0.6 638,784 - GFF1773 0.13 -0.1 638,784 - GFF1773 0.13 -2.8 638,784 - GFF1773 0.13 +1.0 638,784 - GFF1773 0.13 -0.4 638,784 - GFF1773 0.13 +1.2 638,784 - GFF1773 0.13 -0.2 638,784 - GFF1773 0.13 -1.0 638,972 + GFF1773 0.33 +0.3 638,973 - GFF1773 0.33 +0.0 638,973 - GFF1773 0.33 +0.2 638,990 + GFF1773 0.35 +0.7 638,990 + GFF1773 0.35 -0.2 638,990 + GFF1773 0.35 +0.7 638,991 - GFF1773 0.35 +2.4 638,991 - GFF1773 0.35 +0.4 638,991 - GFF1773 0.35 +0.0 639,053 + GFF1773 0.41 +0.4 639,053 + GFF1773 0.41 +0.1 639,053 + GFF1773 0.41 -0.7 639,054 - GFF1773 0.41 +0.3 639,177 - GFF1773 0.54 +0.1 639,440 + GFF1773 0.81 -0.1 639,441 - GFF1773 0.81 +0.0 639,441 - GFF1773 0.81 -0.3 639,506 + GFF1773 0.88 -0.8 639,506 + GFF1773 0.88 -0.4 639,506 + GFF1773 0.88 +1.8 639,507 - GFF1773 0.88 +0.7 639,575 + +0.4 639,575 + +0.6 639,576 - +0.0 639,576 - +0.2 639,584 + +0.2 639,584 + +0.0 639,584 + +0.7 639,584 + +0.4 639,585 - +1.4 639,585 - +0.4 639,585 - +0.6 639,585 - -0.0 639,585 - +0.5 639,585 - +0.7 639,618 - -0.3 639,618 - -0.4 639,725 - GFF1774 0.18 +0.2 639,996 + GFF1774 0.83 +0.2 639,996 + GFF1774 0.83 -0.7 640,000 + GFF1774 0.84 +0.2 640,000 + GFF1774 0.84 -0.4 640,000 + GFF1774 0.84 -0.5 640,000 + GFF1774 0.84 -0.6 640,001 - GFF1774 0.84 +0.2
Or see this region's nucleotide sequence