Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1702 and GFF1703 overlap by 4 nucleotides GFF1703 and GFF1704 are separated by 114 nucleotides
GFF1702 - tungsten-containing formate dehydrogenase alpha subunit, at 556,140 to 558,983
GFF1702
GFF1703 - tungsten-containing formate dehydrogenase beta subunit, at 558,980 to 560,698
GFF1703
GFF1704 - Periplasmic molybdate-binding domain, at 560,813 to 561,883
GFF1704
Position (kb) 558
559
560
561 Strain fitness (log2 ratio) -1
0
1
2 at 558.167 kb on - strand, within GFF1702 at 558.262 kb on + strand, within GFF1702 at 558.263 kb on - strand, within GFF1702 at 558.263 kb on - strand, within GFF1702 at 558.263 kb on - strand, within GFF1702 at 559.368 kb on + strand, within GFF1703 at 559.374 kb on + strand, within GFF1703 at 559.374 kb on + strand, within GFF1703 at 559.375 kb on - strand, within GFF1703 at 559.375 kb on - strand, within GFF1703 at 559.375 kb on - strand, within GFF1703 at 559.375 kb on - strand, within GFF1703 at 559.375 kb on - strand, within GFF1703 at 559.704 kb on + strand, within GFF1703 at 559.704 kb on + strand, within GFF1703 at 559.705 kb on - strand, within GFF1703 at 559.705 kb on - strand, within GFF1703 at 559.705 kb on - strand, within GFF1703 at 559.830 kb on + strand, within GFF1703 at 559.831 kb on - strand, within GFF1703 at 559.831 kb on - strand, within GFF1703 at 559.831 kb on - strand, within GFF1703 at 559.845 kb on + strand, within GFF1703 at 559.845 kb on + strand, within GFF1703 at 559.845 kb on + strand, within GFF1703 at 559.846 kb on - strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.757 kb on + strand at 560.757 kb on + strand at 560.758 kb on - strand at 560.758 kb on - strand at 560.765 kb on + strand at 560.765 kb on + strand at 560.766 kb on - strand at 560.780 kb on + strand at 560.957 kb on + strand, within GFF1704 at 560.958 kb on - strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 558,167 - GFF1702 0.71 -0.1 558,262 + GFF1702 0.75 -1.6 558,263 - GFF1702 0.75 -0.0 558,263 - GFF1702 0.75 +0.1 558,263 - GFF1702 0.75 +1.0 559,368 + GFF1703 0.23 -0.6 559,374 + GFF1703 0.23 -0.0 559,374 + GFF1703 0.23 +0.1 559,375 - GFF1703 0.23 +0.1 559,375 - GFF1703 0.23 +1.0 559,375 - GFF1703 0.23 -1.0 559,375 - GFF1703 0.23 +1.3 559,375 - GFF1703 0.23 -0.3 559,704 + GFF1703 0.42 +0.4 559,704 + GFF1703 0.42 -1.1 559,705 - GFF1703 0.42 -0.3 559,705 - GFF1703 0.42 -0.3 559,705 - GFF1703 0.42 -0.0 559,830 + GFF1703 0.49 +0.5 559,831 - GFF1703 0.50 -0.2 559,831 - GFF1703 0.50 -0.0 559,831 - GFF1703 0.50 -0.9 559,845 + GFF1703 0.50 +0.8 559,845 + GFF1703 0.50 +0.0 559,845 + GFF1703 0.50 +0.3 559,846 - GFF1703 0.50 -0.7 560,442 + GFF1703 0.85 +1.0 560,442 + GFF1703 0.85 +0.4 560,442 + GFF1703 0.85 -0.2 560,442 + GFF1703 0.85 -0.2 560,442 + GFF1703 0.85 -0.9 560,443 - GFF1703 0.85 -1.3 560,443 - GFF1703 0.85 -1.5 560,443 - GFF1703 0.85 -1.0 560,443 - GFF1703 0.85 +0.3 560,443 - GFF1703 0.85 -0.6 560,443 - GFF1703 0.85 +0.8 560,443 - GFF1703 0.85 +0.4 560,757 + +0.2 560,757 + +0.2 560,758 - +0.1 560,758 - -0.1 560,765 + -1.3 560,765 + -1.0 560,766 - -0.1 560,780 + -0.5 560,957 + GFF1704 0.13 +0.2 560,958 - GFF1704 0.14 +0.6 561,626 + GFF1704 0.76 +1.5 561,626 + GFF1704 0.76 -1.6 561,626 + GFF1704 0.76 -0.2 561,626 + GFF1704 0.76 -0.5 561,626 + GFF1704 0.76 +0.2 561,626 + GFF1704 0.76 -0.6 561,626 + GFF1704 0.76 +0.3 561,626 + GFF1704 0.76 +0.3 561,626 + GFF1704 0.76 +0.2 561,626 + GFF1704 0.76 +0.0 561,626 + GFF1704 0.76 -0.5 561,627 - GFF1704 0.76 +0.8 561,627 - GFF1704 0.76 +0.6 561,627 - GFF1704 0.76 +0.2 561,627 - GFF1704 0.76 +2.4 561,627 - GFF1704 0.76 +0.4 561,627 - GFF1704 0.76 -0.7 561,627 - GFF1704 0.76 +0.3 561,627 - GFF1704 0.76 +0.2
Or see this region's nucleotide sequence