Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1654 and GFF1655 overlap by 4 nucleotides GFF1655 and GFF1656 are separated by 3 nucleotides GFF1656 and GFF1657 are separated by 141 nucleotides
GFF1654 - Transcriptional regulator, LysR family, at 507,144 to 508,061
GFF1654
GFF1655 - hypothetical protein, at 508,058 to 508,735
GFF1655
GFF1656 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 508,739 to 509,770
GFF1656
GFF1657 - Transcriptional regulator, IclR family, at 509,912 to 510,784
GFF1657
Position (kb) 508
509
510 Strain fitness (log2 ratio) -1
0
1
2
3 at 507.756 kb on + strand, within GFF1654 at 507.757 kb on - strand, within GFF1654 at 507.972 kb on + strand at 507.973 kb on - strand at 508.059 kb on + strand at 508.083 kb on + strand at 508.083 kb on - strand at 508.084 kb on - strand at 508.095 kb on + strand at 508.189 kb on - strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.558 kb on - strand, within GFF1655 at 508.786 kb on - strand at 509.391 kb on + strand, within GFF1656 at 509.391 kb on + strand, within GFF1656 at 509.391 kb on + strand, within GFF1656 at 509.951 kb on + strand at 509.951 kb on + strand at 509.952 kb on - strand at 509.952 kb on - strand at 509.952 kb on - strand at 509.952 kb on - strand at 510.059 kb on + strand, within GFF1657 at 510.059 kb on + strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.278 kb on + strand, within GFF1657 at 510.278 kb on + strand, within GFF1657 at 510.279 kb on - strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.498 kb on - strand, within GFF1657
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 507,756 + GFF1654 0.67 -0.8 507,757 - GFF1654 0.67 -0.5 507,972 + -0.4 507,973 - -0.9 508,059 + +0.6 508,083 + +0.1 508,083 - -0.5 508,084 - +0.3 508,095 + +0.0 508,189 - GFF1655 0.19 -0.1 508,557 + GFF1655 0.74 +1.0 508,557 + GFF1655 0.74 +1.1 508,557 + GFF1655 0.74 +0.6 508,558 - GFF1655 0.74 +1.2 508,786 - +0.4 509,391 + GFF1656 0.63 -0.0 509,391 + GFF1656 0.63 +1.0 509,391 + GFF1656 0.63 -0.9 509,951 + -0.2 509,951 + +0.4 509,952 - -1.2 509,952 - -0.0 509,952 - +0.1 509,952 - +0.3 510,059 + GFF1657 0.17 +3.6 510,059 + GFF1657 0.17 -0.3 510,060 - GFF1657 0.17 +0.3 510,060 - GFF1657 0.17 +1.0 510,060 - GFF1657 0.17 -0.6 510,060 - GFF1657 0.17 +1.4 510,278 + GFF1657 0.42 -0.5 510,278 + GFF1657 0.42 +0.3 510,279 - GFF1657 0.42 -0.8 510,497 + GFF1657 0.67 +1.0 510,497 + GFF1657 0.67 -0.5 510,497 + GFF1657 0.67 -0.2 510,498 - GFF1657 0.67 -0.0 510,498 - GFF1657 0.67 -0.1 510,498 - GFF1657 0.67 +0.4
Or see this region's nucleotide sequence