Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1647 and GFF1648 are separated by 19 nucleotides GFF1648 and GFF1649 are separated by 2 nucleotides GFF1649 and GFF1650 overlap by 4 nucleotides GFF1650 and GFF1651 overlap by 4 nucleotides
GFF1647 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 503,017 to 504,180
GFF1647
GFF1648 - (De)hydratase mit MaoC domain, at 504,200 to 504,601
GFF1648
GFF1649 - Acyl dehydratase, MaoC-like domain (EC 2.3.1.8), at 504,604 to 505,050
GFF1649
GFF1650 - blr3308; hypothetical protein, at 505,047 to 505,352
GFF1650
GFF1651 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 505,349 to 505,849
GFF1651
Position (kb) 504
505 Strain fitness (log2 ratio) -2
-1
0
1 at 503.306 kb on - strand, within GFF1647 at 503.347 kb on + strand, within GFF1647 at 503.347 kb on + strand, within GFF1647 at 503.989 kb on + strand, within GFF1647 at 503.989 kb on + strand, within GFF1647 at 504.109 kb on + strand at 504.272 kb on + strand, within GFF1648 at 504.272 kb on + strand, within GFF1648 at 504.272 kb on + strand, within GFF1648 at 504.272 kb on + strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.305 kb on - strand, within GFF1648 at 504.306 kb on - strand, within GFF1648 at 504.607 kb on + strand at 504.607 kb on + strand at 504.607 kb on + strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.691 kb on + strand, within GFF1649 at 504.692 kb on - strand, within GFF1649 at 504.692 kb on - strand, within GFF1649 at 504.740 kb on - strand, within GFF1649 at 505.246 kb on - strand, within GFF1650 at 505.451 kb on - strand, within GFF1651
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 503,306 - GFF1647 0.25 -0.3 503,347 + GFF1647 0.28 -0.3 503,347 + GFF1647 0.28 -0.0 503,989 + GFF1647 0.84 -0.4 503,989 + GFF1647 0.84 -0.6 504,109 + +0.8 504,272 + GFF1648 0.18 -0.5 504,272 + GFF1648 0.18 -1.6 504,272 + GFF1648 0.18 +0.3 504,272 + GFF1648 0.18 -1.4 504,273 - GFF1648 0.18 -0.6 504,273 - GFF1648 0.18 +0.2 504,273 - GFF1648 0.18 +0.1 504,273 - GFF1648 0.18 +0.7 504,305 - GFF1648 0.26 -0.0 504,306 - GFF1648 0.26 +0.4 504,607 + -1.8 504,607 + -1.2 504,607 + +0.5 504,608 - +0.5 504,608 - +0.4 504,608 - +0.1 504,608 - -0.2 504,691 + GFF1649 0.19 +0.8 504,692 - GFF1649 0.20 -0.0 504,692 - GFF1649 0.20 -0.8 504,740 - GFF1649 0.30 +0.0 505,246 - GFF1650 0.65 -0.0 505,451 - GFF1651 0.20 +0.5
Or see this region's nucleotide sequence