Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1483 and GFF1484 overlap by 32 nucleotides GFF1484 and GFF1485 overlap by 15 nucleotides GFF1485 and GFF1486 are separated by 4 nucleotides
GFF1483 - Putative diheme cytochrome c-553, at 332,333 to 333,235
GFF1483
GFF1484 - hypothetical protein, at 333,204 to 333,521
GFF1484
GFF1485 - Transcriptional regulator, ArsR family, at 333,507 to 334,199
GFF1485
GFF1486 - hypothetical protein, at 334,204 to 335,289
GFF1486
Position (kb) 333
334
335 Strain fitness (log2 ratio) -2
-1
0
1 at 332.513 kb on + strand, within GFF1483 at 332.513 kb on + strand, within GFF1483 at 332.513 kb on + strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.519 kb on + strand, within GFF1483 at 332.519 kb on + strand, within GFF1483 at 332.520 kb on - strand, within GFF1483 at 332.648 kb on + strand, within GFF1483 at 332.732 kb on + strand, within GFF1483 at 332.733 kb on - strand, within GFF1483 at 332.774 kb on + strand, within GFF1483 at 332.775 kb on - strand, within GFF1483 at 332.775 kb on - strand, within GFF1483 at 332.946 kb on - strand, within GFF1483 at 332.946 kb on - strand, within GFF1483 at 332.946 kb on - strand, within GFF1483 at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.200 kb on + strand at 333.200 kb on + strand at 333.341 kb on + strand, within GFF1484 at 333.341 kb on + strand, within GFF1484 at 333.585 kb on + strand, within GFF1485 at 333.726 kb on + strand, within GFF1485 at 333.726 kb on + strand, within GFF1485 at 333.853 kb on - strand, within GFF1485 at 333.927 kb on + strand, within GFF1485 at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.391 kb on + strand, within GFF1486 at 334.392 kb on - strand, within GFF1486 at 334.394 kb on + strand, within GFF1486 at 334.394 kb on + strand, within GFF1486 at 334.394 kb on + strand, within GFF1486 at 334.395 kb on - strand, within GFF1486 at 334.395 kb on - strand, within GFF1486 at 334.445 kb on + strand, within GFF1486 at 334.446 kb on - strand, within GFF1486 at 334.478 kb on + strand, within GFF1486 at 334.479 kb on - strand, within GFF1486 at 334.523 kb on + strand, within GFF1486 at 334.523 kb on + strand, within GFF1486 at 334.565 kb on + strand, within GFF1486 at 334.566 kb on - strand, within GFF1486 at 334.643 kb on + strand, within GFF1486 at 334.643 kb on + strand, within GFF1486 at 334.644 kb on - strand, within GFF1486 at 334.644 kb on - strand, within GFF1486 at 334.981 kb on + strand, within GFF1486 at 334.981 kb on + strand, within GFF1486 at 334.982 kb on - strand, within GFF1486
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 332,513 + GFF1483 0.20 +1.5 332,513 + GFF1483 0.20 -0.8 332,513 + GFF1483 0.20 -0.7 332,514 - GFF1483 0.20 -0.4 332,514 - GFF1483 0.20 +0.6 332,514 - GFF1483 0.20 -0.6 332,514 - GFF1483 0.20 -0.7 332,514 - GFF1483 0.20 +0.0 332,514 - GFF1483 0.20 -0.7 332,514 - GFF1483 0.20 +1.1 332,519 + GFF1483 0.21 -0.9 332,519 + GFF1483 0.21 +0.2 332,520 - GFF1483 0.21 -0.7 332,648 + GFF1483 0.35 -1.4 332,732 + GFF1483 0.44 +1.2 332,733 - GFF1483 0.44 -0.1 332,774 + GFF1483 0.49 +1.0 332,775 - GFF1483 0.49 +0.2 332,775 - GFF1483 0.49 +0.0 332,946 - GFF1483 0.68 -0.0 332,946 - GFF1483 0.68 +0.3 332,946 - GFF1483 0.68 -0.3 333,194 + -0.1 333,194 + +0.1 333,194 + -0.2 333,194 + -0.9 333,194 + -0.0 333,194 + +0.8 333,194 + +0.1 333,195 - +0.3 333,195 - -2.7 333,195 - +0.4 333,195 - -0.3 333,195 - -0.1 333,200 + +0.9 333,200 + +0.6 333,341 + GFF1484 0.43 -0.1 333,341 + GFF1484 0.43 +0.3 333,585 + GFF1485 0.11 -0.2 333,726 + GFF1485 0.32 -1.2 333,726 + GFF1485 0.32 +0.8 333,853 - GFF1485 0.50 -0.4 333,927 + GFF1485 0.61 -0.2 334,269 - -0.4 334,269 - +1.5 334,269 - -0.0 334,269 - -0.1 334,269 - -0.2 334,269 - -0.7 334,391 + GFF1486 0.17 +0.2 334,392 - GFF1486 0.17 +0.0 334,394 + GFF1486 0.17 -0.5 334,394 + GFF1486 0.17 +0.1 334,394 + GFF1486 0.17 -0.6 334,395 - GFF1486 0.18 +0.2 334,395 - GFF1486 0.18 +0.1 334,445 + GFF1486 0.22 +0.0 334,446 - GFF1486 0.22 -0.1 334,478 + GFF1486 0.25 +0.3 334,479 - GFF1486 0.25 -0.3 334,523 + GFF1486 0.29 +0.5 334,523 + GFF1486 0.29 -1.7 334,565 + GFF1486 0.33 -0.5 334,566 - GFF1486 0.33 -0.9 334,643 + GFF1486 0.40 +0.6 334,643 + GFF1486 0.40 -0.4 334,644 - GFF1486 0.41 -0.2 334,644 - GFF1486 0.41 -1.4 334,981 + GFF1486 0.72 +0.5 334,981 + GFF1486 0.72 -0.1 334,982 - GFF1486 0.72 -0.5
Or see this region's nucleotide sequence