Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1357 and GFF1358 are separated by 29 nucleotides GFF1358 and GFF1359 are separated by 13 nucleotides GFF1359 and GFF1360 are separated by 77 nucleotides
GFF1357 - Sensory box histidine kinase, at 211,251 to 213,275
GFF1357
GFF1358 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 213,305 to 214,093
GFF1358
GFF1359 - NADPH:quinone oxidoreductase, at 214,107 to 214,658
GFF1359
GFF1360 - hypothetical protein, at 214,736 to 216,403
GFF1360
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.198 kb on + strand at 213.198 kb on + strand at 213.198 kb on + strand at 213.198 kb on + strand at 213.198 kb on + strand at 213.198 kb on + strand at 213.198 kb on + strand at 213.198 kb on + strand at 213.199 kb on - strand at 213.199 kb on - strand at 213.199 kb on - strand at 213.199 kb on - strand at 213.486 kb on + strand, within GFF1358 at 213.487 kb on - strand, within GFF1358 at 213.800 kb on + strand, within GFF1358 at 213.801 kb on - strand, within GFF1358 at 213.801 kb on - strand, within GFF1358 at 213.801 kb on - strand, within GFF1358 at 213.801 kb on - strand, within GFF1358 at 213.801 kb on - strand, within GFF1358 at 214.040 kb on + strand at 214.040 kb on + strand at 214.138 kb on + strand at 214.138 kb on + strand at 214.138 kb on + strand at 214.138 kb on + strand at 214.139 kb on - strand at 214.139 kb on - strand at 214.139 kb on - strand at 214.261 kb on + strand, within GFF1359 at 214.261 kb on + strand, within GFF1359 at 214.261 kb on + strand, within GFF1359 at 214.367 kb on - strand, within GFF1359 at 214.423 kb on + strand, within GFF1359 at 214.424 kb on - strand, within GFF1359 at 214.424 kb on - strand, within GFF1359 at 214.519 kb on + strand, within GFF1359 at 214.519 kb on + strand, within GFF1359 at 214.520 kb on - strand, within GFF1359 at 214.520 kb on - strand, within GFF1359 at 214.520 kb on - strand, within GFF1359 at 214.520 kb on - strand, within GFF1359 at 214.520 kb on - strand, within GFF1359 at 214.676 kb on + strand at 214.677 kb on - strand at 214.716 kb on + strand at 214.716 kb on + strand at 214.716 kb on + strand at 214.716 kb on + strand at 214.716 kb on + strand at 214.716 kb on + strand at 214.716 kb on + strand at 214.717 kb on - strand at 214.717 kb on - strand at 214.717 kb on - strand at 214.717 kb on - strand at 215.175 kb on + strand, within GFF1360 at 215.176 kb on - strand, within GFF1360 at 215.319 kb on + strand, within GFF1360 at 215.319 kb on + strand, within GFF1360 at 215.319 kb on + strand, within GFF1360 at 215.319 kb on + strand, within GFF1360 at 215.320 kb on + strand, within GFF1360 at 215.320 kb on - strand, within GFF1360 at 215.320 kb on - strand, within GFF1360 at 215.320 kb on - strand, within GFF1360 at 215.364 kb on + strand, within GFF1360 at 215.421 kb on + strand, within GFF1360 at 215.422 kb on - strand, within GFF1360 at 215.514 kb on - strand, within GFF1360 at 215.514 kb on - strand, within GFF1360 at 215.532 kb on + strand, within GFF1360 at 215.532 kb on + strand, within GFF1360 at 215.533 kb on - strand, within GFF1360 at 215.577 kb on + strand, within GFF1360 at 215.577 kb on + strand, within GFF1360 at 215.578 kb on - strand, within GFF1360 at 215.578 kb on - strand, within GFF1360 at 215.578 kb on - strand, within GFF1360 at 215.578 kb on - strand, within GFF1360 at 215.578 kb on - strand, within GFF1360 at 215.578 kb on - strand, within GFF1360
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 213,198 + +0.6 213,198 + +0.5 213,198 + +0.3 213,198 + +1.1 213,198 + -1.9 213,198 + +0.2 213,198 + +0.2 213,198 + +0.3 213,199 - +0.0 213,199 - -0.0 213,199 - -2.2 213,199 - +0.5 213,486 + GFF1358 0.23 +0.3 213,487 - GFF1358 0.23 +0.3 213,800 + GFF1358 0.63 -0.5 213,801 - GFF1358 0.63 -1.0 213,801 - GFF1358 0.63 -0.5 213,801 - GFF1358 0.63 +0.2 213,801 - GFF1358 0.63 -0.2 213,801 - GFF1358 0.63 -0.3 214,040 + +0.5 214,040 + -0.1 214,138 + +0.3 214,138 + +0.5 214,138 + +0.6 214,138 + -0.2 214,139 - -0.1 214,139 - -0.1 214,139 - -0.4 214,261 + GFF1359 0.28 +0.3 214,261 + GFF1359 0.28 +1.5 214,261 + GFF1359 0.28 +0.1 214,367 - GFF1359 0.47 +0.1 214,423 + GFF1359 0.57 -0.5 214,424 - GFF1359 0.57 +0.1 214,424 - GFF1359 0.57 +0.1 214,519 + GFF1359 0.75 -0.3 214,519 + GFF1359 0.75 +0.3 214,520 - GFF1359 0.75 +1.4 214,520 - GFF1359 0.75 +1.4 214,520 - GFF1359 0.75 -0.4 214,520 - GFF1359 0.75 -0.0 214,520 - GFF1359 0.75 +0.3 214,676 + -0.6 214,677 - +0.2 214,716 + -1.0 214,716 + -0.7 214,716 + -0.6 214,716 + -0.2 214,716 + +0.5 214,716 + +0.3 214,716 + -1.0 214,717 - -0.9 214,717 - -0.6 214,717 - +2.0 214,717 - +0.1 215,175 + GFF1360 0.26 -1.3 215,176 - GFF1360 0.26 +0.2 215,319 + GFF1360 0.35 -0.2 215,319 + GFF1360 0.35 +0.2 215,319 + GFF1360 0.35 -0.2 215,319 + GFF1360 0.35 +0.2 215,320 + GFF1360 0.35 -0.5 215,320 - GFF1360 0.35 +0.4 215,320 - GFF1360 0.35 -0.4 215,320 - GFF1360 0.35 -0.5 215,364 + GFF1360 0.38 -0.3 215,421 + GFF1360 0.41 -1.6 215,422 - GFF1360 0.41 +2.2 215,514 - GFF1360 0.47 +0.7 215,514 - GFF1360 0.47 +0.7 215,532 + GFF1360 0.48 -0.7 215,532 + GFF1360 0.48 +1.0 215,533 - GFF1360 0.48 +0.0 215,577 + GFF1360 0.50 -0.8 215,577 + GFF1360 0.50 -0.1 215,578 - GFF1360 0.50 -1.3 215,578 - GFF1360 0.50 +0.1 215,578 - GFF1360 0.50 +0.8 215,578 - GFF1360 0.50 +0.3 215,578 - GFF1360 0.50 +0.6 215,578 - GFF1360 0.50 +0.6
Or see this region's nucleotide sequence