Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1324 and GFF1325 overlap by 4 nucleotides GFF1325 and GFF1326 are separated by 81 nucleotides GFF1326 and GFF1327 are separated by 35 nucleotides
GFF1324 - Uncharacterized ABC transporter, permease component YrbE, at 172,478 to 173,260
GFF1324
GFF1325 - Methionine ABC transporter ATP-binding protein, at 173,257 to 174,084
GFF1325
GFF1326 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 174,166 to 175,632
GFF1326
GFF1327 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 175,668 to 180,446
GFF1327
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1 at 173.579 kb on + strand, within GFF1325 at 173.579 kb on + strand, within GFF1325 at 173.580 kb on - strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.841 kb on - strand, within GFF1325 at 174.126 kb on + strand at 174.126 kb on + strand at 174.126 kb on + strand at 174.164 kb on + strand at 174.165 kb on - strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.309 kb on - strand at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.608 kb on + strand, within GFF1326 at 175.418 kb on + strand, within GFF1326 at 175.553 kb on + strand at 175.553 kb on + strand at 175.553 kb on + strand at 175.553 kb on + strand at 175.554 kb on - strand at 175.554 kb on - strand at 175.554 kb on - strand at 175.583 kb on + strand at 175.583 kb on + strand at 175.583 kb on + strand at 175.583 kb on + strand at 175.583 kb on + strand at 175.584 kb on - strand at 175.584 kb on - strand at 175.584 kb on - strand at 175.604 kb on + strand at 175.604 kb on + strand at 175.605 kb on - strand at 175.605 kb on - strand at 175.669 kb on + strand at 175.670 kb on - strand at 175.670 kb on - strand at 175.670 kb on - strand at 175.768 kb on + strand at 175.768 kb on + strand at 175.768 kb on + strand at 175.768 kb on + strand at 175.768 kb on + strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 176.017 kb on + strand at 176.018 kb on - strand at 176.018 kb on - strand at 176.018 kb on - strand at 176.023 kb on + strand at 176.023 kb on + strand at 176.023 kb on + strand at 176.023 kb on + strand at 176.023 kb on + strand at 176.023 kb on + strand at 176.023 kb on + strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.024 kb on - strand at 176.101 kb on + strand at 176.101 kb on + strand at 176.101 kb on + strand at 176.101 kb on + strand at 176.101 kb on + strand at 176.101 kb on + strand at 176.101 kb on + strand at 176.102 kb on - strand at 176.102 kb on - strand at 176.102 kb on - strand at 176.102 kb on - strand at 176.215 kb on + strand, within GFF1327 at 176.216 kb on - strand, within GFF1327 at 176.216 kb on - strand, within GFF1327 at 176.318 kb on - strand, within GFF1327 at 176.318 kb on - strand, within GFF1327 at 176.318 kb on - strand, within GFF1327 at 176.341 kb on + strand, within GFF1327 at 176.341 kb on + strand, within GFF1327 at 176.342 kb on - strand, within GFF1327 at 176.342 kb on - strand, within GFF1327 at 176.342 kb on - strand, within GFF1327
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 173,579 + GFF1325 0.39 +0.5 173,579 + GFF1325 0.39 -0.7 173,580 - GFF1325 0.39 +0.1 173,840 + GFF1325 0.70 +0.7 173,840 + GFF1325 0.70 -1.2 173,840 + GFF1325 0.70 +0.1 173,841 - GFF1325 0.71 -0.8 174,126 + -0.2 174,126 + +0.5 174,126 + +0.1 174,164 + +0.1 174,165 - -0.3 174,308 + -0.3 174,308 + -0.1 174,308 + +0.8 174,308 + -0.1 174,308 + +0.4 174,309 - +0.1 174,434 + GFF1326 0.18 -0.3 174,434 + GFF1326 0.18 -0.3 174,434 + GFF1326 0.18 +1.0 174,434 + GFF1326 0.18 -0.5 174,434 + GFF1326 0.18 -1.2 174,434 + GFF1326 0.18 +1.0 174,434 + GFF1326 0.18 -0.5 174,434 + GFF1326 0.18 -0.6 174,434 + GFF1326 0.18 -0.2 174,434 + GFF1326 0.18 -1.2 174,435 - GFF1326 0.18 +0.3 174,435 - GFF1326 0.18 -0.6 174,435 - GFF1326 0.18 +0.2 174,435 - GFF1326 0.18 -0.5 174,435 - GFF1326 0.18 -1.0 174,435 - GFF1326 0.18 +0.1 174,608 + GFF1326 0.30 -0.2 175,418 + GFF1326 0.85 -0.1 175,553 + -0.5 175,553 + -0.4 175,553 + -0.2 175,553 + +0.2 175,554 - +0.2 175,554 - -1.0 175,554 - +0.6 175,583 + +0.5 175,583 + -1.6 175,583 + +0.4 175,583 + +1.1 175,583 + -0.1 175,584 - -0.1 175,584 - -0.3 175,584 - +0.4 175,604 + +0.6 175,604 + -0.4 175,605 - +0.4 175,605 - +0.1 175,669 + +0.4 175,670 - +0.4 175,670 - -0.3 175,670 - -0.5 175,768 + +1.2 175,768 + -0.3 175,768 + +0.5 175,768 + -1.5 175,768 + -1.2 175,769 - -0.0 175,769 - +0.7 175,769 - -0.2 175,769 - -0.7 175,769 - +1.0 175,769 - +0.0 175,769 - +0.4 176,017 + +1.4 176,018 - -0.4 176,018 - +0.5 176,018 - +0.4 176,023 + -0.6 176,023 + +0.0 176,023 + -0.4 176,023 + +0.2 176,023 + -1.5 176,023 + -0.1 176,023 + -0.5 176,024 - -0.6 176,024 - +1.7 176,024 - +0.8 176,024 - -0.1 176,024 - +0.2 176,024 - -0.2 176,024 - -0.5 176,024 - -0.3 176,024 - +1.0 176,101 + -0.6 176,101 + -0.3 176,101 + -1.0 176,101 + -0.8 176,101 + -0.0 176,101 + -0.4 176,101 + -2.0 176,102 - +0.4 176,102 - -0.2 176,102 - +1.0 176,102 - -0.5 176,215 + GFF1327 0.11 -1.0 176,216 - GFF1327 0.11 -0.2 176,216 - GFF1327 0.11 -1.0 176,318 - GFF1327 0.14 -0.4 176,318 - GFF1327 0.14 -0.1 176,318 - GFF1327 0.14 -1.5 176,341 + GFF1327 0.14 +0.0 176,341 + GFF1327 0.14 +0.1 176,342 - GFF1327 0.14 -0.2 176,342 - GFF1327 0.14 -0.2 176,342 - GFF1327 0.14 +0.6
Or see this region's nucleotide sequence