Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1259

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1257 and GFF1258 are separated by 39 nucleotidesGFF1258 and GFF1259 overlap by 25 nucleotidesGFF1259 and GFF1260 are separated by 126 nucleotides GFF1257 - FAD/FMN-containing dehydrogenases, at 113,963 to 117,841 GFF1257 GFF1258 - hypothetical protein, at 117,881 to 118,051 GFF1258 GFF1259 - Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3), at 118,027 to 119,346 GFF1259 GFF1260 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 119,473 to 120,354 GFF1260 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 117.648 kb on + strandat 117.763 kb on - strandat 117.763 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.885 kb on + strandat 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.968 kb on + strand, within GFF1258at 117.968 kb on + strand, within GFF1258at 117.968 kb on + strand, within GFF1258at 117.969 kb on - strand, within GFF1258at 117.969 kb on - strand, within GFF1258at 117.979 kb on + strand, within GFF1258at 117.980 kb on - strand, within GFF1258at 117.984 kb on + strand, within GFF1258at 117.984 kb on + strand, within GFF1258at 117.985 kb on - strand, within GFF1258at 118.177 kb on + strand, within GFF1259at 118.177 kb on + strand, within GFF1259at 118.178 kb on - strand, within GFF1259at 118.178 kb on - strand, within GFF1259at 118.198 kb on + strand, within GFF1259at 118.199 kb on - strand, within GFF1259at 118.199 kb on - strand, within GFF1259at 118.199 kb on - strand, within GFF1259at 118.216 kb on + strand, within GFF1259at 118.216 kb on + strand, within GFF1259at 118.216 kb on + strand, within GFF1259at 118.217 kb on - strand, within GFF1259at 118.217 kb on - strand, within GFF1259at 118.228 kb on + strand, within GFF1259at 118.229 kb on - strand, within GFF1259at 118.229 kb on - strand, within GFF1259at 118.229 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.421 kb on - strand, within GFF1259at 118.421 kb on - strand, within GFF1259at 118.421 kb on - strand, within GFF1259at 118.451 kb on - strand, within GFF1259at 118.451 kb on - strand, within GFF1259at 118.480 kb on + strand, within GFF1259at 118.480 kb on + strand, within GFF1259at 118.480 kb on + strand, within GFF1259at 118.481 kb on - strand, within GFF1259at 118.483 kb on + strand, within GFF1259at 118.483 kb on + strand, within GFF1259at 118.777 kb on + strand, within GFF1259at 118.777 kb on + strand, within GFF1259at 118.778 kb on - strand, within GFF1259at 118.778 kb on - strand, within GFF1259at 118.778 kb on - strand, within GFF1259at 118.855 kb on + strand, within GFF1259at 118.855 kb on + strand, within GFF1259at 118.856 kb on - strand, within GFF1259at 118.889 kb on - strand, within GFF1259at 118.889 kb on - strand, within GFF1259at 118.912 kb on + strand, within GFF1259at 118.912 kb on + strand, within GFF1259at 118.913 kb on - strand, within GFF1259at 118.913 kb on - strand, within GFF1259at 118.913 kb on - strand, within GFF1259at 118.996 kb on + strand, within GFF1259at 118.996 kb on + strand, within GFF1259at 118.997 kb on - strand, within GFF1259at 118.997 kb on - strand, within GFF1259at 119.095 kb on + strand, within GFF1259at 119.095 kb on + strand, within GFF1259at 119.123 kb on - strand, within GFF1259at 119.262 kb on + strandat 119.344 kb on + strandat 119.344 kb on + strandat 119.345 kb on - strandat 119.345 kb on - strandat 119.345 kb on - strandat 119.397 kb on - strandat 119.671 kb on + strand, within GFF1260at 119.672 kb on - strand, within GFF1260at 119.789 kb on - strand, within GFF1260at 119.813 kb on - strand, within GFF1260at 119.884 kb on + strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.983 kb on + strand, within GFF1260at 119.983 kb on + strand, within GFF1260at 120.143 kb on - strand, within GFF1260at 120.143 kb on - strand, within GFF1260at 120.220 kb on + strand, within GFF1260at 120.229 kb on + strand, within GFF1260

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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117,648 + -1.4
117,763 - -2.4
117,763 - -1.0
117,869 - -2.1
117,869 - -0.2
117,869 - -0.0
117,869 - +1.5
117,885 + -0.2
117,900 + GFF1258 0.11 -0.3
117,900 + GFF1258 0.11 +1.0
117,900 + GFF1258 0.11 -0.0
117,900 + GFF1258 0.11 +0.2
117,900 + GFF1258 0.11 +1.4
117,900 + GFF1258 0.11 -0.3
117,901 - GFF1258 0.12 -0.6
117,901 - GFF1258 0.12 +0.1
117,901 - GFF1258 0.12 +0.2
117,901 - GFF1258 0.12 +0.3
117,901 - GFF1258 0.12 -0.4
117,901 - GFF1258 0.12 +0.5
117,901 - GFF1258 0.12 -0.0
117,901 - GFF1258 0.12 +0.2
117,901 - GFF1258 0.12 +0.1
117,901 - GFF1258 0.12 -1.6
117,968 + GFF1258 0.51 +0.8
117,968 + GFF1258 0.51 +0.3
117,968 + GFF1258 0.51 -0.2
117,969 - GFF1258 0.51 +0.1
117,969 - GFF1258 0.51 +0.7
117,979 + GFF1258 0.57 -0.6
117,980 - GFF1258 0.58 -0.8
117,984 + GFF1258 0.60 +0.2
117,984 + GFF1258 0.60 +0.7
117,985 - GFF1258 0.61 +0.6
118,177 + GFF1259 0.11 -0.3
118,177 + GFF1259 0.11 +0.1
118,178 - GFF1259 0.11 +0.9
118,178 - GFF1259 0.11 -1.1
118,198 + GFF1259 0.13 +1.2
118,199 - GFF1259 0.13 -0.3
118,199 - GFF1259 0.13 +0.5
118,199 - GFF1259 0.13 +0.3
118,216 + GFF1259 0.14 +0.1
118,216 + GFF1259 0.14 -0.4
118,216 + GFF1259 0.14 +0.4
118,217 - GFF1259 0.14 -0.6
118,217 - GFF1259 0.14 -0.1
118,228 + GFF1259 0.15 -0.2
118,229 - GFF1259 0.15 -0.3
118,229 - GFF1259 0.15 +0.4
118,229 - GFF1259 0.15 +0.5
118,397 - GFF1259 0.28 +1.4
118,397 - GFF1259 0.28 -0.0
118,397 - GFF1259 0.28 -0.0
118,397 - GFF1259 0.28 +1.4
118,397 - GFF1259 0.28 -0.1
118,397 - GFF1259 0.28 -0.0
118,397 - GFF1259 0.28 -0.2
118,420 + GFF1259 0.30 +0.5
118,420 + GFF1259 0.30 +0.6
118,420 + GFF1259 0.30 +0.2
118,420 + GFF1259 0.30 -0.0
118,420 + GFF1259 0.30 +1.2
118,421 - GFF1259 0.30 +0.4
118,421 - GFF1259 0.30 +0.8
118,421 - GFF1259 0.30 -0.7
118,451 - GFF1259 0.32 +2.0
118,451 - GFF1259 0.32 -0.1
118,480 + GFF1259 0.34 -0.0
118,480 + GFF1259 0.34 +0.5
118,480 + GFF1259 0.34 +0.5
118,481 - GFF1259 0.34 +0.1
118,483 + GFF1259 0.35 -1.4
118,483 + GFF1259 0.35 +1.3
118,777 + GFF1259 0.57 +1.8
118,777 + GFF1259 0.57 +2.5
118,778 - GFF1259 0.57 +0.1
118,778 - GFF1259 0.57 -0.3
118,778 - GFF1259 0.57 -0.4
118,855 + GFF1259 0.63 +0.6
118,855 + GFF1259 0.63 +1.2
118,856 - GFF1259 0.63 +1.0
118,889 - GFF1259 0.65 -0.3
118,889 - GFF1259 0.65 -0.9
118,912 + GFF1259 0.67 +0.3
118,912 + GFF1259 0.67 -0.1
118,913 - GFF1259 0.67 -0.3
118,913 - GFF1259 0.67 -0.6
118,913 - GFF1259 0.67 +0.5
118,996 + GFF1259 0.73 +0.6
118,996 + GFF1259 0.73 +0.2
118,997 - GFF1259 0.73 +0.5
118,997 - GFF1259 0.73 +0.5
119,095 + GFF1259 0.81 -0.0
119,095 + GFF1259 0.81 +0.3
119,123 - GFF1259 0.83 +0.5
119,262 + -0.2
119,344 + -0.1
119,344 + -0.6
119,345 - -1.0
119,345 - -0.0
119,345 - +0.1
119,397 - +0.1
119,671 + GFF1260 0.22 +0.4
119,672 - GFF1260 0.23 +1.0
119,789 - GFF1260 0.36 -1.3
119,813 - GFF1260 0.39 -1.0
119,884 + GFF1260 0.47 -0.1
119,885 - GFF1260 0.47 +0.2
119,885 - GFF1260 0.47 +0.2
119,885 - GFF1260 0.47 +1.0
119,885 - GFF1260 0.47 -0.0
119,885 - GFF1260 0.47 -0.7
119,885 - GFF1260 0.47 -1.2
119,885 - GFF1260 0.47 -0.1
119,983 + GFF1260 0.58 +1.2
119,983 + GFF1260 0.58 +0.0
120,143 - GFF1260 0.76 +1.0
120,143 - GFF1260 0.76 +0.2
120,220 + GFF1260 0.85 +0.3
120,229 + GFF1260 0.86 -0.1

Or see this region's nucleotide sequence