Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1190

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1188 and GFF1189 are separated by 69 nucleotidesGFF1189 and GFF1190 are separated by 27 nucleotidesGFF1190 and GFF1191 are separated by 10 nucleotidesGFF1191 and GFF1192 overlap by 4 nucleotidesGFF1192 and GFF1193 are separated by 10 nucleotides GFF1188 - Formate dehydrogenase chain D (EC 1.2.1.2), at 46,439 to 47,293 GFF1188 GFF1189 - putative exported protein, at 47,363 to 47,749 GFF1189 GFF1190 - Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2), at 47,777 to 49,012 GFF1190 GFF1191 - putative lipoprotein, at 49,023 to 49,277 GFF1191 GFF1192 - Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2), at 49,274 to 49,876 GFF1192 GFF1193 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 49,887 to 52,856 GFF1193 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 46.789 kb on - strand, within GFF1188at 46.789 kb on - strand, within GFF1188at 46.827 kb on + strand, within GFF1188at 46.827 kb on + strand, within GFF1188at 46.827 kb on + strand, within GFF1188at 46.827 kb on + strand, within GFF1188at 46.828 kb on - strand, within GFF1188at 46.828 kb on - strand, within GFF1188at 46.828 kb on - strand, within GFF1188at 46.828 kb on - strand, within GFF1188at 46.866 kb on + strand, within GFF1188at 46.866 kb on + strand, within GFF1188at 46.866 kb on + strand, within GFF1188at 46.866 kb on + strand, within GFF1188at 46.867 kb on - strand, within GFF1188at 46.867 kb on - strand, within GFF1188at 46.867 kb on - strand, within GFF1188at 46.867 kb on - strand, within GFF1188at 46.867 kb on - strand, within GFF1188at 46.867 kb on - strand, within GFF1188at 47.103 kb on + strand, within GFF1188at 47.103 kb on + strand, within GFF1188at 47.103 kb on + strand, within GFF1188at 47.172 kb on + strand, within GFF1188at 47.304 kb on + strandat 47.304 kb on + strandat 47.364 kb on + strandat 47.364 kb on + strandat 47.364 kb on + strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.475 kb on + strand, within GFF1189at 47.476 kb on - strand, within GFF1189at 47.476 kb on - strand, within GFF1189at 47.563 kb on - strand, within GFF1189at 47.586 kb on + strand, within GFF1189at 47.586 kb on + strand, within GFF1189at 47.586 kb on + strand, within GFF1189at 47.587 kb on - strand, within GFF1189at 47.587 kb on - strand, within GFF1189at 47.601 kb on + strand, within GFF1189at 47.602 kb on - strand, within GFF1189at 47.602 kb on - strand, within GFF1189at 47.602 kb on - strand, within GFF1189at 47.874 kb on + strandat 47.875 kb on - strandat 47.875 kb on - strandat 47.875 kb on - strandat 47.917 kb on - strand, within GFF1190at 47.937 kb on + strand, within GFF1190at 47.937 kb on + strand, within GFF1190at 47.937 kb on + strand, within GFF1190at 47.937 kb on + strand, within GFF1190at 47.938 kb on - strand, within GFF1190at 47.938 kb on - strand, within GFF1190at 47.938 kb on - strand, within GFF1190at 47.967 kb on + strand, within GFF1190at 47.967 kb on + strand, within GFF1190at 47.968 kb on - strand, within GFF1190at 47.968 kb on - strand, within GFF1190at 47.968 kb on - strand, within GFF1190at 47.968 kb on - strand, within GFF1190at 47.968 kb on - strand, within GFF1190at 48.051 kb on + strand, within GFF1190at 48.051 kb on + strand, within GFF1190at 48.051 kb on + strand, within GFF1190at 48.052 kb on - strand, within GFF1190at 48.052 kb on - strand, within GFF1190at 48.052 kb on - strand, within GFF1190at 48.052 kb on - strand, within GFF1190at 48.453 kb on + strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.519 kb on + strand, within GFF1190at 48.520 kb on - strand, within GFF1190at 48.520 kb on - strand, within GFF1190at 48.636 kb on + strand, within GFF1190at 48.636 kb on + strand, within GFF1190at 48.691 kb on - strand, within GFF1190at 48.699 kb on - strand, within GFF1190at 48.699 kb on - strand, within GFF1190at 48.699 kb on - strand, within GFF1190at 49.051 kb on + strand, within GFF1191at 49.051 kb on + strand, within GFF1191at 49.052 kb on - strand, within GFF1191at 49.052 kb on - strand, within GFF1191at 49.052 kb on - strand, within GFF1191at 49.066 kb on + strand, within GFF1191at 49.066 kb on + strand, within GFF1191at 49.066 kb on + strand, within GFF1191at 49.067 kb on - strand, within GFF1191at 49.135 kb on + strand, within GFF1191at 49.135 kb on + strand, within GFF1191at 49.136 kb on - strand, within GFF1191at 49.136 kb on - strand, within GFF1191at 49.159 kb on + strand, within GFF1191at 49.160 kb on - strand, within GFF1191at 49.303 kb on - strandat 49.303 kb on - strandat 49.303 kb on - strandat 49.464 kb on + strand, within GFF1192at 49.465 kb on - strand, within GFF1192at 49.593 kb on + strand, within GFF1192at 49.594 kb on - strand, within GFF1192at 49.594 kb on - strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.660 kb on - strand, within GFF1192at 49.660 kb on - strand, within GFF1192at 49.660 kb on - strand, within GFF1192at 49.948 kb on + strandat 49.949 kb on - strandat 49.949 kb on - strandat 49.949 kb on - strandat 49.949 kb on - strandat 49.952 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.955 kb on - strandat 49.955 kb on - strandat 49.955 kb on - strandat 50.011 kb on + strandat 50.011 kb on + strandat 50.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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46,789 - GFF1188 0.41 +0.1
46,789 - GFF1188 0.41 +0.1
46,827 + GFF1188 0.45 +0.2
46,827 + GFF1188 0.45 +0.5
46,827 + GFF1188 0.45 -0.4
46,827 + GFF1188 0.45 +0.2
46,828 - GFF1188 0.45 +0.7
46,828 - GFF1188 0.45 -0.6
46,828 - GFF1188 0.45 -0.4
46,828 - GFF1188 0.45 -1.3
46,866 + GFF1188 0.50 +0.1
46,866 + GFF1188 0.50 -0.7
46,866 + GFF1188 0.50 -1.3
46,866 + GFF1188 0.50 -0.6
46,867 - GFF1188 0.50 -1.0
46,867 - GFF1188 0.50 -0.6
46,867 - GFF1188 0.50 +0.0
46,867 - GFF1188 0.50 -1.7
46,867 - GFF1188 0.50 -0.0
46,867 - GFF1188 0.50 -0.0
47,103 + GFF1188 0.78 -0.1
47,103 + GFF1188 0.78 -2.0
47,103 + GFF1188 0.78 -0.0
47,172 + GFF1188 0.86 +0.5
47,304 + -0.3
47,304 + -0.0
47,364 + +0.3
47,364 + +0.2
47,364 + +1.0
47,365 - -0.3
47,365 - -0.0
47,365 - -0.7
47,365 - -0.0
47,365 - -1.2
47,365 - +0.3
47,475 + GFF1189 0.29 -0.6
47,476 - GFF1189 0.29 +1.4
47,476 - GFF1189 0.29 +2.0
47,563 - GFF1189 0.52 -0.2
47,586 + GFF1189 0.58 +0.1
47,586 + GFF1189 0.58 -0.0
47,586 + GFF1189 0.58 +0.2
47,587 - GFF1189 0.58 +0.0
47,587 - GFF1189 0.58 -0.3
47,601 + GFF1189 0.61 +0.2
47,602 - GFF1189 0.62 -0.2
47,602 - GFF1189 0.62 +0.0
47,602 - GFF1189 0.62 +0.8
47,874 + -1.4
47,875 - -0.2
47,875 - +0.7
47,875 - +0.2
47,917 - GFF1190 0.11 -1.4
47,937 + GFF1190 0.13 -0.7
47,937 + GFF1190 0.13 -0.0
47,937 + GFF1190 0.13 -1.2
47,937 + GFF1190 0.13 -0.7
47,938 - GFF1190 0.13 -1.4
47,938 - GFF1190 0.13 -0.9
47,938 - GFF1190 0.13 -0.0
47,967 + GFF1190 0.15 +0.3
47,967 + GFF1190 0.15 -0.6
47,968 - GFF1190 0.15 -0.1
47,968 - GFF1190 0.15 +0.4
47,968 - GFF1190 0.15 -0.5
47,968 - GFF1190 0.15 -0.3
47,968 - GFF1190 0.15 -0.3
48,051 + GFF1190 0.22 -0.0
48,051 + GFF1190 0.22 -0.4
48,051 + GFF1190 0.22 -0.6
48,052 - GFF1190 0.22 +1.0
48,052 - GFF1190 0.22 +0.3
48,052 - GFF1190 0.22 -0.3
48,052 - GFF1190 0.22 -0.7
48,453 + GFF1190 0.55 -2.0
48,454 - GFF1190 0.55 -0.3
48,454 - GFF1190 0.55 -0.1
48,454 - GFF1190 0.55 -0.3
48,454 - GFF1190 0.55 -0.5
48,519 + GFF1190 0.60 +0.3
48,520 - GFF1190 0.60 +0.4
48,520 - GFF1190 0.60 -0.5
48,636 + GFF1190 0.69 -1.0
48,636 + GFF1190 0.69 -0.0
48,691 - GFF1190 0.74 +0.4
48,699 - GFF1190 0.75 +0.5
48,699 - GFF1190 0.75 -0.8
48,699 - GFF1190 0.75 +0.5
49,051 + GFF1191 0.11 +0.8
49,051 + GFF1191 0.11 +0.6
49,052 - GFF1191 0.11 -0.0
49,052 - GFF1191 0.11 +0.1
49,052 - GFF1191 0.11 -0.6
49,066 + GFF1191 0.17 +0.6
49,066 + GFF1191 0.17 -1.5
49,066 + GFF1191 0.17 -1.0
49,067 - GFF1191 0.17 +0.5
49,135 + GFF1191 0.44 -0.9
49,135 + GFF1191 0.44 -0.6
49,136 - GFF1191 0.44 +1.0
49,136 - GFF1191 0.44 -0.4
49,159 + GFF1191 0.53 -1.3
49,160 - GFF1191 0.54 -0.5
49,303 - +1.1
49,303 - -0.0
49,303 - -1.3
49,464 + GFF1192 0.32 -0.6
49,465 - GFF1192 0.32 -0.6
49,593 + GFF1192 0.53 -0.2
49,594 - GFF1192 0.53 +1.1
49,594 - GFF1192 0.53 +0.7
49,659 + GFF1192 0.64 -0.5
49,659 + GFF1192 0.64 +0.6
49,659 + GFF1192 0.64 -0.8
49,659 + GFF1192 0.64 +0.8
49,659 + GFF1192 0.64 -0.0
49,659 + GFF1192 0.64 -0.1
49,660 - GFF1192 0.64 -0.3
49,660 - GFF1192 0.64 -0.8
49,660 - GFF1192 0.64 +0.5
49,948 + -0.6
49,949 - -0.6
49,949 - +0.7
49,949 - -0.0
49,949 - +1.4
49,952 + +0.6
49,954 + +0.5
49,954 + -1.0
49,954 + +0.2
49,954 + +0.5
49,954 + -0.4
49,954 + -0.2
49,954 + -0.9
49,954 + -0.4
49,955 - +0.4
49,955 - +1.0
49,955 - -0.2
50,011 + +1.0
50,011 + -0.0
50,011 + -0.6

Or see this region's nucleotide sequence