Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1183 and GFF1184 are separated by 77 nucleotides GFF1184 and GFF1185 are separated by 0 nucleotides GFF1185 and GFF1186 overlap by 4 nucleotides
GFF1183 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 40,526 to 43,018
GFF1183
GFF1184 - hypothetical protein, at 43,096 to 44,622
GFF1184
GFF1185 - Heme oxygenase HemO, associated with heme uptake, at 44,623 to 45,267
GFF1185
GFF1186 - General secretion pathway protein N, at 45,264 to 46,040
GFF1186
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.135 kb on - strand, within GFF1183 at 42.329 kb on + strand, within GFF1183 at 42.329 kb on + strand, within GFF1183 at 42.329 kb on + strand, within GFF1183 at 42.330 kb on - strand, within GFF1183 at 42.330 kb on - strand, within GFF1183 at 42.509 kb on + strand, within GFF1183 at 42.510 kb on - strand, within GFF1183 at 42.513 kb on - strand, within GFF1183 at 42.513 kb on - strand, within GFF1183 at 42.515 kb on + strand, within GFF1183 at 42.515 kb on + strand, within GFF1183 at 42.515 kb on + strand, within GFF1183 at 42.516 kb on - strand, within GFF1183 at 42.516 kb on - strand, within GFF1183 at 42.516 kb on - strand, within GFF1183 at 42.516 kb on - strand, within GFF1183 at 42.593 kb on + strand, within GFF1183 at 42.594 kb on - strand, within GFF1183 at 42.857 kb on + strand at 42.933 kb on - strand at 42.935 kb on + strand at 42.935 kb on + strand at 42.936 kb on - strand at 42.936 kb on - strand at 42.936 kb on - strand at 43.008 kb on - strand at 43.008 kb on - strand at 43.008 kb on - strand at 43.082 kb on - strand at 43.189 kb on + strand at 43.190 kb on - strand at 43.502 kb on - strand, within GFF1184 at 43.525 kb on + strand, within GFF1184 at 43.525 kb on + strand, within GFF1184 at 43.526 kb on - strand, within GFF1184 at 43.526 kb on - strand, within GFF1184 at 43.526 kb on - strand, within GFF1184 at 43.568 kb on - strand, within GFF1184 at 43.568 kb on - strand, within GFF1184 at 43.573 kb on + strand, within GFF1184 at 43.573 kb on + strand, within GFF1184 at 43.574 kb on - strand, within GFF1184 at 43.574 kb on - strand, within GFF1184 at 43.723 kb on + strand, within GFF1184 at 43.798 kb on + strand, within GFF1184 at 43.798 kb on + strand, within GFF1184 at 43.798 kb on + strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.874 kb on - strand, within GFF1184 at 43.961 kb on - strand, within GFF1184 at 44.032 kb on + strand, within GFF1184 at 44.032 kb on + strand, within GFF1184 at 44.032 kb on + strand, within GFF1184 at 44.044 kb on + strand, within GFF1184 at 44.045 kb on - strand, within GFF1184 at 44.428 kb on + strand, within GFF1184 at 44.776 kb on + strand, within GFF1185 at 44.800 kb on + strand, within GFF1185 at 44.800 kb on + strand, within GFF1185 at 44.801 kb on - strand, within GFF1185 at 44.831 kb on - strand, within GFF1185 at 44.831 kb on - strand, within GFF1185 at 45.001 kb on + strand, within GFF1185
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 42,135 - GFF1183 0.65 -2.1 42,329 + GFF1183 0.72 +1.1 42,329 + GFF1183 0.72 +0.2 42,329 + GFF1183 0.72 +0.3 42,330 - GFF1183 0.72 -0.0 42,330 - GFF1183 0.72 -0.0 42,509 + GFF1183 0.80 -0.0 42,510 - GFF1183 0.80 -0.7 42,513 - GFF1183 0.80 +0.1 42,513 - GFF1183 0.80 +2.0 42,515 + GFF1183 0.80 -0.3 42,515 + GFF1183 0.80 +0.8 42,515 + GFF1183 0.80 -0.6 42,516 - GFF1183 0.80 -0.8 42,516 - GFF1183 0.80 +0.0 42,516 - GFF1183 0.80 +0.1 42,516 - GFF1183 0.80 -0.3 42,593 + GFF1183 0.83 +0.4 42,594 - GFF1183 0.83 +0.9 42,857 + +1.8 42,933 - +0.8 42,935 + +0.4 42,935 + -0.0 42,936 - +1.0 42,936 - +0.1 42,936 - -0.4 43,008 - -0.0 43,008 - +0.4 43,008 - +1.2 43,082 - -0.5 43,189 + -0.0 43,190 - -0.6 43,502 - GFF1184 0.27 +1.0 43,525 + GFF1184 0.28 +0.5 43,525 + GFF1184 0.28 +1.5 43,526 - GFF1184 0.28 +0.2 43,526 - GFF1184 0.28 +1.0 43,526 - GFF1184 0.28 -0.9 43,568 - GFF1184 0.31 -0.0 43,568 - GFF1184 0.31 +1.5 43,573 + GFF1184 0.31 +0.6 43,573 + GFF1184 0.31 -0.1 43,574 - GFF1184 0.31 +0.5 43,574 - GFF1184 0.31 -2.2 43,723 + GFF1184 0.41 +0.6 43,798 + GFF1184 0.46 +0.9 43,798 + GFF1184 0.46 +0.1 43,798 + GFF1184 0.46 -0.9 43,799 - GFF1184 0.46 -1.6 43,799 - GFF1184 0.46 +0.6 43,799 - GFF1184 0.46 +1.4 43,799 - GFF1184 0.46 -0.4 43,874 - GFF1184 0.51 +1.2 43,961 - GFF1184 0.57 +0.4 44,032 + GFF1184 0.61 -0.6 44,032 + GFF1184 0.61 -0.5 44,032 + GFF1184 0.61 -0.5 44,044 + GFF1184 0.62 -0.0 44,045 - GFF1184 0.62 -0.4 44,428 + GFF1184 0.87 +0.9 44,776 + GFF1185 0.24 +0.2 44,800 + GFF1185 0.27 -0.0 44,800 + GFF1185 0.27 +0.3 44,801 - GFF1185 0.28 +0.4 44,831 - GFF1185 0.32 -0.1 44,831 - GFF1185 0.32 +0.1 45,001 + GFF1185 0.59 +0.1
Or see this region's nucleotide sequence