Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1094

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
9,487	+				-0.1
9,487	+				+0.1
9,696	-		GFF1093	0.59	+0.4
9,696	-		GFF1093	0.59	+0.5
9,879	+				+1.9
9,880	-				-0.4
10,077	+				+0.3
10,131	-				-0.1
10,145	-				+0.3
10,145	-				-1.0
10,145	-				-0.1
10,300	-				+0.2
10,311	+				-1.1
10,361	+				-0.6
10,361	+				+0.1
10,383	+				+0.4
10,398	-				-0.3
10,398	-				-0.1
10,475	+				+0.1
10,489	+				-1.1
10,490	-				-0.4
10,490	-				+0.9
10,490	-				-0.1
10,716	+		GFF1094	0.10	+0.2
10,788	+		GFF1094	0.12	+0.7
10,788	+		GFF1094	0.12	+0.6
10,789	-		GFF1094	0.12	+0.7
10,789	-		GFF1094	0.12	+0.4
10,793	-		GFF1094	0.12	-0.1
10,833	+		GFF1094	0.14	+0.8
10,903	+		GFF1094	0.16	+0.2
10,904	-		GFF1094	0.16	-0.1
10,904	-		GFF1094	0.16	+0.8
11,086	+		GFF1094	0.22	-0.1
11,173	-		GFF1094	0.24	-1.1
11,276	-		GFF1094	0.27	+1.4
11,323	-		GFF1094	0.29	-0.5
11,378	+		GFF1094	0.31	+1.5
11,606	+		GFF1094	0.38	-0.7
11,606	+		GFF1094	0.38	+0.7
11,711	+		GFF1094	0.41	+0.9
11,711	+		GFF1094	0.41	+0.4
11,712	-		GFF1094	0.41	+0.4
12,020	+		GFF1094	0.51	-0.3
12,078	+		GFF1094	0.53	-0.8
12,103	-		GFF1094	0.53	-0.4
12,189	+		GFF1094	0.56	+2.1
12,205	+		GFF1094	0.57	-0.1
12,206	-		GFF1094	0.57	-0.3
12,206	-		GFF1094	0.57	-1.1
12,209	+		GFF1094	0.57	-0.5
12,209	+		GFF1094	0.57	-0.0
12,210	-		GFF1094	0.57	-0.6
12,573	+		GFF1094	0.68	+0.4
12,592	+		GFF1094	0.69	+0.2
12,610	+		GFF1094	0.69	+0.9
12,610	+		GFF1094	0.69	-0.0
12,610	+		GFF1094	0.69	-0.4
12,611	-		GFF1094	0.69	-0.6
12,611	-		GFF1094	0.69	-1.8
12,611	-		GFF1094	0.69	+1.2
12,616	-		GFF1094	0.69	-0.5
12,625	+		GFF1094	0.70	+1.6
12,650	-		GFF1094	0.70	-0.0
12,725	-		GFF1094	0.73	-0.5
12,980	+		GFF1094	0.81	+0.7
12,981	-		GFF1094	0.81	-1.6
13,039	-		GFF1094	0.83	-1.4
13,045	-		GFF1094	0.83	+0.7
13,045	-		GFF1094	0.83	-0.1
13,123	-		GFF1094	0.85	+0.4
13,198	-		GFF1094	0.88	-0.3
13,201	+		GFF1094	0.88	+1.3
13,202	-		GFF1094	0.88	+0.5
13,286	+				-0.7
13,286	+				+0.0
13,287	-				+0.5
13,305	+				+0.2
13,327	+				-0.3
13,327	+				+0.7
13,334	+				-0.9
13,470	+				-0.2
13,676	+		GFF1095	0.35	-1.2
13,677	-		GFF1095	0.35	-0.1
13,677	-		GFF1095	0.35	-0.5
13,857	+				+0.3
13,857	+				+0.1
13,857	+				+0.5
14,018	-				+0.5
14,018	-				+0.9
14,123	-				-0.5
14,194	+				+1.0
14,345	+				+0.1
14,345	+				+0.9
14,346	-				+0.1
14,397	+				+0.5
14,398	-				+0.2