Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1014 and GFF1015 overlap by 4 nucleotides GFF1015 and GFF1016 are separated by 87 nucleotides GFF1016 and GFF1017 are separated by 34 nucleotides
GFF1014 - Benzoate transport, inner-membrane translocator precursor, at 752,095 to 753,087
GFF1014
GFF1015 - Benzoate transport, inner-membrane translocator, at 753,084 to 753,947
GFF1015
GFF1016 - Benzoate transport, extracellular ligand-binding receptor, at 754,035 to 755,222
GFF1016
GFF1017 - Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-), at 755,257 to 756,291
GFF1017
Position (kb) 754
755
756 Strain fitness (log2 ratio) -1
0
1 at 753.139 kb on + strand at 753.180 kb on + strand, within GFF1015 at 753.472 kb on + strand, within GFF1015 at 753.472 kb on + strand, within GFF1015 at 753.635 kb on - strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.683 kb on - strand, within GFF1015 at 753.799 kb on + strand, within GFF1015 at 753.799 kb on + strand, within GFF1015 at 753.814 kb on + strand, within GFF1015 at 753.815 kb on - strand, within GFF1015 at 753.815 kb on - strand, within GFF1015 at 753.901 kb on + strand at 754.210 kb on + strand, within GFF1016 at 754.283 kb on - strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.298 kb on - strand, within GFF1016 at 754.326 kb on + strand, within GFF1016 at 754.326 kb on + strand, within GFF1016 at 754.327 kb on - strand, within GFF1016 at 754.327 kb on - strand, within GFF1016 at 754.330 kb on + strand, within GFF1016 at 754.331 kb on - strand, within GFF1016 at 754.378 kb on + strand, within GFF1016 at 754.493 kb on - strand, within GFF1016 at 754.555 kb on + strand, within GFF1016 at 754.857 kb on - strand, within GFF1016 at 754.936 kb on - strand, within GFF1016 at 755.087 kb on + strand, within GFF1016 at 755.088 kb on - strand, within GFF1016 at 755.342 kb on - strand at 755.489 kb on + strand, within GFF1017 at 755.489 kb on + strand, within GFF1017 at 755.490 kb on - strand, within GFF1017 at 755.490 kb on - strand, within GFF1017 at 755.600 kb on + strand, within GFF1017 at 755.635 kb on + strand, within GFF1017 at 755.727 kb on - strand, within GFF1017 at 755.727 kb on - strand, within GFF1017 at 755.816 kb on + strand, within GFF1017 at 755.817 kb on - strand, within GFF1017 at 755.880 kb on - strand, within GFF1017 at 755.894 kb on + strand, within GFF1017 at 755.895 kb on - strand, within GFF1017 at 755.988 kb on - strand, within GFF1017 at 756.006 kb on - strand, within GFF1017 at 756.006 kb on - strand, within GFF1017 at 756.090 kb on - strand, within GFF1017
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 753,139 + +0.5 753,180 + GFF1015 0.11 +0.4 753,472 + GFF1015 0.45 -0.6 753,472 + GFF1015 0.45 -0.1 753,635 - GFF1015 0.64 +0.1 753,682 + GFF1015 0.69 -0.6 753,682 + GFF1015 0.69 +0.3 753,682 + GFF1015 0.69 +0.1 753,683 - GFF1015 0.69 -0.7 753,799 + GFF1015 0.83 +0.1 753,799 + GFF1015 0.83 -0.2 753,814 + GFF1015 0.84 +0.4 753,815 - GFF1015 0.85 +0.7 753,815 - GFF1015 0.85 +0.5 753,901 + -0.6 754,210 + GFF1016 0.15 +0.1 754,283 - GFF1016 0.21 +0.8 754,297 + GFF1016 0.22 +0.9 754,297 + GFF1016 0.22 +0.5 754,297 + GFF1016 0.22 -0.3 754,298 - GFF1016 0.22 +1.7 754,326 + GFF1016 0.24 +1.4 754,326 + GFF1016 0.24 +0.3 754,327 - GFF1016 0.25 -0.4 754,327 - GFF1016 0.25 +0.2 754,330 + GFF1016 0.25 -0.1 754,331 - GFF1016 0.25 -0.8 754,378 + GFF1016 0.29 +0.1 754,493 - GFF1016 0.39 +0.6 754,555 + GFF1016 0.44 +0.5 754,857 - GFF1016 0.69 +1.3 754,936 - GFF1016 0.76 -1.1 755,087 + GFF1016 0.89 -0.1 755,088 - GFF1016 0.89 +0.5 755,342 - -0.2 755,489 + GFF1017 0.22 -0.6 755,489 + GFF1017 0.22 +0.3 755,490 - GFF1017 0.23 +0.7 755,490 - GFF1017 0.23 +0.2 755,600 + GFF1017 0.33 -0.9 755,635 + GFF1017 0.37 +1.1 755,727 - GFF1017 0.45 +0.1 755,727 - GFF1017 0.45 +0.2 755,816 + GFF1017 0.54 +0.2 755,817 - GFF1017 0.54 -0.8 755,880 - GFF1017 0.60 +0.0 755,894 + GFF1017 0.62 -0.1 755,895 - GFF1017 0.62 +0.6 755,988 - GFF1017 0.71 +0.4 756,006 - GFF1017 0.72 -0.6 756,006 - GFF1017 0.72 +1.2 756,090 - GFF1017 0.80 +0.2
Or see this region's nucleotide sequence