Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03583

Experiment: LZ4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_03582 and OHPLBJKB_03583 are separated by 838 nucleotidesOHPLBJKB_03583 and OHPLBJKB_03584 overlap by 1 nucleotides OHPLBJKB_03582: OHPLBJKB_03582 - HTH-type transcriptional regulator LeuO, at 3,755,395 to 3,756,339 _03582 OHPLBJKB_03583: OHPLBJKB_03583 - 2-isopropylmalate synthase, at 3,757,178 to 3,758,749 _03583 OHPLBJKB_03584: OHPLBJKB_03584 - 3-isopropylmalate dehydrogenase, at 3,758,749 to 3,759,840 _03584 Position (kb) 3757 3758 3759Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3756.198 kb on + strand, within OHPLBJKB_03582at 3756.199 kb on - strand, within OHPLBJKB_03582at 3756.199 kb on - strand, within OHPLBJKB_03582at 3756.262 kb on + strandat 3756.263 kb on - strandat 3756.263 kb on - strandat 3756.263 kb on - strandat 3756.298 kb on + strandat 3756.329 kb on - strandat 3756.339 kb on + strandat 3756.343 kb on + strandat 3756.343 kb on + strandat 3756.343 kb on + strandat 3756.344 kb on - strandat 3756.344 kb on - strandat 3756.361 kb on + strandat 3756.361 kb on + strandat 3756.362 kb on - strandat 3756.424 kb on - strandat 3756.573 kb on + strandat 3756.836 kb on - strandat 3756.857 kb on - strandat 3756.879 kb on + strandat 3756.880 kb on - strandat 3756.880 kb on - strandat 3756.998 kb on - strandat 3756.998 kb on - strandat 3757.027 kb on + strandat 3757.028 kb on - strandat 3757.028 kb on - strandat 3757.028 kb on - strandat 3757.028 kb on - strandat 3757.030 kb on + strandat 3757.030 kb on + strandat 3757.031 kb on - strandat 3757.033 kb on + strandat 3757.033 kb on + strandat 3757.034 kb on - strandat 3757.037 kb on - strandat 3757.037 kb on - strandat 3757.083 kb on + strandat 3757.084 kb on - strandat 3757.156 kb on - strandat 3757.195 kb on + strandat 3757.233 kb on + strandat 3757.288 kb on + strandat 3757.289 kb on - strandat 3757.386 kb on + strand, within OHPLBJKB_03583at 3757.386 kb on + strand, within OHPLBJKB_03583at 3757.386 kb on + strand, within OHPLBJKB_03583at 3757.387 kb on - strand, within OHPLBJKB_03583at 3757.387 kb on - strand, within OHPLBJKB_03583at 3757.387 kb on - strand, within OHPLBJKB_03583at 3757.387 kb on - strand, within OHPLBJKB_03583at 3757.387 kb on - strand, within OHPLBJKB_03583at 3757.463 kb on - strand, within OHPLBJKB_03583at 3757.468 kb on + strand, within OHPLBJKB_03583at 3757.469 kb on - strand, within OHPLBJKB_03583at 3757.469 kb on - strand, within OHPLBJKB_03583at 3757.475 kb on - strand, within OHPLBJKB_03583at 3757.543 kb on + strand, within OHPLBJKB_03583at 3757.544 kb on - strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.547 kb on + strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.548 kb on - strand, within OHPLBJKB_03583at 3757.549 kb on + strand, within OHPLBJKB_03583at 3757.567 kb on + strand, within OHPLBJKB_03583at 3757.612 kb on + strand, within OHPLBJKB_03583at 3757.749 kb on + strand, within OHPLBJKB_03583at 3757.771 kb on + strand, within OHPLBJKB_03583at 3757.771 kb on + strand, within OHPLBJKB_03583at 3757.772 kb on - strand, within OHPLBJKB_03583at 3757.780 kb on - strand, within OHPLBJKB_03583at 3757.783 kb on + strand, within OHPLBJKB_03583at 3757.783 kb on + strand, within OHPLBJKB_03583at 3757.784 kb on - strand, within OHPLBJKB_03583at 3757.830 kb on + strand, within OHPLBJKB_03583at 3757.830 kb on + strand, within OHPLBJKB_03583at 3757.831 kb on - strand, within OHPLBJKB_03583at 3757.931 kb on - strand, within OHPLBJKB_03583at 3757.974 kb on + strand, within OHPLBJKB_03583at 3757.992 kb on + strand, within OHPLBJKB_03583at 3757.993 kb on - strand, within OHPLBJKB_03583at 3757.993 kb on - strand, within OHPLBJKB_03583at 3757.993 kb on - strand, within OHPLBJKB_03583at 3758.008 kb on + strand, within OHPLBJKB_03583at 3758.009 kb on - strand, within OHPLBJKB_03583at 3758.108 kb on + strand, within OHPLBJKB_03583at 3758.132 kb on - strand, within OHPLBJKB_03583at 3758.214 kb on - strand, within OHPLBJKB_03583at 3758.215 kb on + strand, within OHPLBJKB_03583at 3758.230 kb on + strand, within OHPLBJKB_03583at 3758.246 kb on + strand, within OHPLBJKB_03583at 3758.486 kb on - strand, within OHPLBJKB_03583at 3758.501 kb on + strand, within OHPLBJKB_03583at 3758.501 kb on + strand, within OHPLBJKB_03583at 3758.501 kb on + strand, within OHPLBJKB_03583at 3758.502 kb on - strand, within OHPLBJKB_03583at 3758.502 kb on - strand, within OHPLBJKB_03583at 3758.503 kb on + strand, within OHPLBJKB_03583at 3758.504 kb on - strand, within OHPLBJKB_03583at 3758.523 kb on - strand, within OHPLBJKB_03583at 3758.586 kb on - strand, within OHPLBJKB_03583at 3758.586 kb on - strand, within OHPLBJKB_03583at 3758.586 kb on - strand, within OHPLBJKB_03583at 3758.586 kb on - strand, within OHPLBJKB_03583at 3758.662 kb on - strandat 3758.662 kb on - strandat 3758.671 kb on + strandat 3758.671 kb on + strandat 3758.767 kb on - strandat 3758.876 kb on - strand, within OHPLBJKB_03584at 3758.876 kb on - strand, within OHPLBJKB_03584at 3758.882 kb on + strand, within OHPLBJKB_03584at 3759.000 kb on - strand, within OHPLBJKB_03584at 3759.046 kb on - strand, within OHPLBJKB_03584at 3759.060 kb on - strand, within OHPLBJKB_03584at 3759.089 kb on - strand, within OHPLBJKB_03584at 3759.089 kb on - strand, within OHPLBJKB_03584at 3759.181 kb on + strand, within OHPLBJKB_03584at 3759.181 kb on + strand, within OHPLBJKB_03584at 3759.181 kb on + strand, within OHPLBJKB_03584at 3759.181 kb on + strand, within OHPLBJKB_03584at 3759.181 kb on + strand, within OHPLBJKB_03584at 3759.210 kb on + strand, within OHPLBJKB_03584at 3759.220 kb on + strand, within OHPLBJKB_03584at 3759.248 kb on - strand, within OHPLBJKB_03584at 3759.248 kb on - strand, within OHPLBJKB_03584at 3759.248 kb on - strand, within OHPLBJKB_03584at 3759.248 kb on - strand, within OHPLBJKB_03584at 3759.271 kb on - strand, within OHPLBJKB_03584at 3759.359 kb on + strand, within OHPLBJKB_03584at 3759.417 kb on + strand, within OHPLBJKB_03584at 3759.418 kb on - strand, within OHPLBJKB_03584at 3759.418 kb on - strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.421 kb on + strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.422 kb on - strand, within OHPLBJKB_03584at 3759.586 kb on + strand, within OHPLBJKB_03584at 3759.737 kb on + strandat 3759.737 kb on + strandat 3759.738 kb on - strandat 3759.738 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
remove
3,756,198 + OHPLBJKB_03582 0.85 +1.1
3,756,199 - OHPLBJKB_03582 0.85 +0.3
3,756,199 - OHPLBJKB_03582 0.85 +0.4
3,756,262 + +0.6
3,756,263 - -0.8
3,756,263 - +1.3
3,756,263 - +1.0
3,756,298 + -0.6
3,756,329 - -0.9
3,756,339 + +0.1
3,756,343 + -0.6
3,756,343 + -1.5
3,756,343 + +0.3
3,756,344 - +0.5
3,756,344 - +0.5
3,756,361 + -1.4
3,756,361 + +1.2
3,756,362 - -1.4
3,756,424 - -1.1
3,756,573 + +0.5
3,756,836 - -0.7
3,756,857 - +0.8
3,756,879 + +0.8
3,756,880 - -0.8
3,756,880 - +0.8
3,756,998 - -0.2
3,756,998 - -0.1
3,757,027 + -0.1
3,757,028 - -1.3
3,757,028 - +0.9
3,757,028 - -0.6
3,757,028 - -1.2
3,757,030 + -1.2
3,757,030 + -0.2
3,757,031 - +0.5
3,757,033 + -2.2
3,757,033 + +0.4
3,757,034 - -0.4
3,757,037 - -0.6
3,757,037 - +0.4
3,757,083 + -0.5
3,757,084 - -0.0
3,757,156 - -0.6
3,757,195 + +1.2
3,757,233 + -1.9
3,757,288 + -0.1
3,757,289 - -0.2
3,757,386 + OHPLBJKB_03583 0.13 -0.8
3,757,386 + OHPLBJKB_03583 0.13 +0.9
3,757,386 + OHPLBJKB_03583 0.13 +0.0
3,757,387 - OHPLBJKB_03583 0.13 -0.4
3,757,387 - OHPLBJKB_03583 0.13 +0.0
3,757,387 - OHPLBJKB_03583 0.13 -1.1
3,757,387 - OHPLBJKB_03583 0.13 -0.2
3,757,387 - OHPLBJKB_03583 0.13 +0.1
3,757,463 - OHPLBJKB_03583 0.18 -0.7
3,757,468 + OHPLBJKB_03583 0.18 -0.4
3,757,469 - OHPLBJKB_03583 0.19 +0.9
3,757,469 - OHPLBJKB_03583 0.19 -0.9
3,757,475 - OHPLBJKB_03583 0.19 +0.2
3,757,543 + OHPLBJKB_03583 0.23 +0.7
3,757,544 - OHPLBJKB_03583 0.23 -0.0
3,757,547 + OHPLBJKB_03583 0.23 +0.5
3,757,547 + OHPLBJKB_03583 0.23 +0.7
3,757,547 + OHPLBJKB_03583 0.23 +0.1
3,757,547 + OHPLBJKB_03583 0.23 -0.2
3,757,547 + OHPLBJKB_03583 0.23 +0.4
3,757,547 + OHPLBJKB_03583 0.23 -0.0
3,757,547 + OHPLBJKB_03583 0.23 +0.2
3,757,548 - OHPLBJKB_03583 0.24 -0.6
3,757,548 - OHPLBJKB_03583 0.24 +0.3
3,757,548 - OHPLBJKB_03583 0.24 -0.4
3,757,548 - OHPLBJKB_03583 0.24 -0.6
3,757,548 - OHPLBJKB_03583 0.24 +1.0
3,757,548 - OHPLBJKB_03583 0.24 +0.8
3,757,548 - OHPLBJKB_03583 0.24 -0.4
3,757,548 - OHPLBJKB_03583 0.24 +0.3
3,757,548 - OHPLBJKB_03583 0.24 +0.6
3,757,548 - OHPLBJKB_03583 0.24 -0.3
3,757,548 - OHPLBJKB_03583 0.24 -1.4
3,757,548 - OHPLBJKB_03583 0.24 +0.1
3,757,548 - OHPLBJKB_03583 0.24 -0.1
3,757,548 - OHPLBJKB_03583 0.24 +0.3
3,757,548 - OHPLBJKB_03583 0.24 +0.2
3,757,548 - OHPLBJKB_03583 0.24 -0.4
3,757,549 + OHPLBJKB_03583 0.24 -0.4
3,757,567 + OHPLBJKB_03583 0.25 -1.0
3,757,612 + OHPLBJKB_03583 0.28 +0.6
3,757,749 + OHPLBJKB_03583 0.36 -0.4
3,757,771 + OHPLBJKB_03583 0.38 +0.4
3,757,771 + OHPLBJKB_03583 0.38 -0.4
3,757,772 - OHPLBJKB_03583 0.38 +0.3
3,757,780 - OHPLBJKB_03583 0.38 +0.7
3,757,783 + OHPLBJKB_03583 0.38 -0.8
3,757,783 + OHPLBJKB_03583 0.38 -0.4
3,757,784 - OHPLBJKB_03583 0.39 +0.4
3,757,830 + OHPLBJKB_03583 0.41 +1.2
3,757,830 + OHPLBJKB_03583 0.41 -1.6
3,757,831 - OHPLBJKB_03583 0.42 -0.2
3,757,931 - OHPLBJKB_03583 0.48 -1.4
3,757,974 + OHPLBJKB_03583 0.51 +0.1
3,757,992 + OHPLBJKB_03583 0.52 +1.0
3,757,993 - OHPLBJKB_03583 0.52 -0.0
3,757,993 - OHPLBJKB_03583 0.52 -0.1
3,757,993 - OHPLBJKB_03583 0.52 -0.1
3,758,008 + OHPLBJKB_03583 0.53 -0.9
3,758,009 - OHPLBJKB_03583 0.53 +0.1
3,758,108 + OHPLBJKB_03583 0.59 +0.4
3,758,132 - OHPLBJKB_03583 0.61 -0.0
3,758,214 - OHPLBJKB_03583 0.66 -0.3
3,758,215 + OHPLBJKB_03583 0.66 -0.9
3,758,230 + OHPLBJKB_03583 0.67 -0.1
3,758,246 + OHPLBJKB_03583 0.68 +0.4
3,758,486 - OHPLBJKB_03583 0.83 -0.2
3,758,501 + OHPLBJKB_03583 0.84 -0.1
3,758,501 + OHPLBJKB_03583 0.84 +1.4
3,758,501 + OHPLBJKB_03583 0.84 +0.8
3,758,502 - OHPLBJKB_03583 0.84 +0.1
3,758,502 - OHPLBJKB_03583 0.84 +0.2
3,758,503 + OHPLBJKB_03583 0.84 +0.4
3,758,504 - OHPLBJKB_03583 0.84 -1.9
3,758,523 - OHPLBJKB_03583 0.86 -0.9
3,758,586 - OHPLBJKB_03583 0.90 +0.1
3,758,586 - OHPLBJKB_03583 0.90 +0.0
3,758,586 - OHPLBJKB_03583 0.90 +0.6
3,758,586 - OHPLBJKB_03583 0.90 -0.1
3,758,662 - +0.1
3,758,662 - -0.5
3,758,671 + -0.1
3,758,671 + -0.5
3,758,767 - -1.2
3,758,876 - OHPLBJKB_03584 0.12 +0.1
3,758,876 - OHPLBJKB_03584 0.12 +0.3
3,758,882 + OHPLBJKB_03584 0.12 +0.2
3,759,000 - OHPLBJKB_03584 0.23 +0.6
3,759,046 - OHPLBJKB_03584 0.27 +1.2
3,759,060 - OHPLBJKB_03584 0.28 -0.2
3,759,089 - OHPLBJKB_03584 0.31 -0.0
3,759,089 - OHPLBJKB_03584 0.31 -0.4
3,759,181 + OHPLBJKB_03584 0.40 +0.4
3,759,181 + OHPLBJKB_03584 0.40 +0.1
3,759,181 + OHPLBJKB_03584 0.40 -1.2
3,759,181 + OHPLBJKB_03584 0.40 +0.2
3,759,181 + OHPLBJKB_03584 0.40 +0.3
3,759,210 + OHPLBJKB_03584 0.42 -0.4
3,759,220 + OHPLBJKB_03584 0.43 -1.8
3,759,248 - OHPLBJKB_03584 0.46 +0.8
3,759,248 - OHPLBJKB_03584 0.46 -1.1
3,759,248 - OHPLBJKB_03584 0.46 +0.6
3,759,248 - OHPLBJKB_03584 0.46 +3.2
3,759,271 - OHPLBJKB_03584 0.48 +0.1
3,759,359 + OHPLBJKB_03584 0.56 -0.0
3,759,417 + OHPLBJKB_03584 0.61 +2.2
3,759,418 - OHPLBJKB_03584 0.61 -0.1
3,759,418 - OHPLBJKB_03584 0.61 +0.7
3,759,421 + OHPLBJKB_03584 0.62 +0.4
3,759,421 + OHPLBJKB_03584 0.62 -0.9
3,759,421 + OHPLBJKB_03584 0.62 -1.4
3,759,421 + OHPLBJKB_03584 0.62 -0.1
3,759,421 + OHPLBJKB_03584 0.62 -0.9
3,759,421 + OHPLBJKB_03584 0.62 -0.5
3,759,421 + OHPLBJKB_03584 0.62 +1.1
3,759,421 + OHPLBJKB_03584 0.62 -0.2
3,759,422 - OHPLBJKB_03584 0.62 -0.4
3,759,422 - OHPLBJKB_03584 0.62 -0.0
3,759,422 - OHPLBJKB_03584 0.62 +1.0
3,759,422 - OHPLBJKB_03584 0.62 -0.4
3,759,422 - OHPLBJKB_03584 0.62 -0.9
3,759,422 - OHPLBJKB_03584 0.62 -0.6
3,759,422 - OHPLBJKB_03584 0.62 -0.9
3,759,422 - OHPLBJKB_03584 0.62 +0.5
3,759,586 + OHPLBJKB_03584 0.77 -0.1
3,759,737 + +0.8
3,759,737 + +1.0
3,759,738 - +0.1
3,759,738 - -1.2

Or see this region's nucleotide sequence