Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03346

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03345 and OHPLBJKB_03346 are separated by 86 nucleotidesOHPLBJKB_03346 and OHPLBJKB_03347 overlap by 4 nucleotidesOHPLBJKB_03347 and OHPLBJKB_03348 overlap by 8 nucleotides OHPLBJKB_03345: OHPLBJKB_03345 - Aldehyde reductase YahK, at 3,492,715 to 3,493,764 _03345 OHPLBJKB_03346: OHPLBJKB_03346 - Autoinducer 2 import system permease protein LsrD, at 3,493,851 to 3,494,807 _03346 OHPLBJKB_03347: OHPLBJKB_03347 - Ribose import permease protein RbsC, at 3,494,804 to 3,495,775 _03347 OHPLBJKB_03348: OHPLBJKB_03348 - Fructose import ATP-binding protein FruK, at 3,495,768 to 3,497,252 _03348 Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -2 -1 0 1at 3492.889 kb on - strand, within OHPLBJKB_03345at 3493.003 kb on - strand, within OHPLBJKB_03345at 3493.017 kb on + strand, within OHPLBJKB_03345at 3493.018 kb on - strand, within OHPLBJKB_03345at 3493.030 kb on + strand, within OHPLBJKB_03345at 3493.030 kb on + strand, within OHPLBJKB_03345at 3493.030 kb on + strand, within OHPLBJKB_03345at 3493.031 kb on - strand, within OHPLBJKB_03345at 3493.031 kb on - strand, within OHPLBJKB_03345at 3493.031 kb on - strand, within OHPLBJKB_03345at 3493.095 kb on + strand, within OHPLBJKB_03345at 3493.153 kb on - strand, within OHPLBJKB_03345at 3493.200 kb on + strand, within OHPLBJKB_03345at 3493.200 kb on + strand, within OHPLBJKB_03345at 3493.200 kb on + strand, within OHPLBJKB_03345at 3493.201 kb on - strand, within OHPLBJKB_03345at 3493.201 kb on - strand, within OHPLBJKB_03345at 3493.274 kb on + strand, within OHPLBJKB_03345at 3493.349 kb on + strand, within OHPLBJKB_03345at 3493.350 kb on - strand, within OHPLBJKB_03345at 3493.350 kb on - strand, within OHPLBJKB_03345at 3493.423 kb on - strand, within OHPLBJKB_03345at 3493.423 kb on - strand, within OHPLBJKB_03345at 3493.424 kb on + strand, within OHPLBJKB_03345at 3493.424 kb on + strand, within OHPLBJKB_03345at 3493.424 kb on + strand, within OHPLBJKB_03345at 3493.425 kb on - strand, within OHPLBJKB_03345at 3493.425 kb on - strand, within OHPLBJKB_03345at 3493.425 kb on - strand, within OHPLBJKB_03345at 3493.425 kb on - strand, within OHPLBJKB_03345at 3493.425 kb on - strand, within OHPLBJKB_03345at 3493.425 kb on - strand, within OHPLBJKB_03345at 3493.449 kb on - strand, within OHPLBJKB_03345at 3493.486 kb on - strand, within OHPLBJKB_03345at 3493.540 kb on + strand, within OHPLBJKB_03345at 3493.598 kb on + strand, within OHPLBJKB_03345at 3493.599 kb on - strand, within OHPLBJKB_03345at 3493.771 kb on + strandat 3493.781 kb on + strandat 3493.782 kb on - strandat 3493.785 kb on + strandat 3493.785 kb on + strandat 3493.785 kb on + strandat 3493.785 kb on + strandat 3493.785 kb on + strandat 3493.785 kb on + strandat 3493.785 kb on + strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.786 kb on - strandat 3493.791 kb on + strandat 3493.791 kb on + strandat 3493.791 kb on + strandat 3493.792 kb on - strandat 3493.792 kb on - strandat 3493.808 kb on + strandat 3493.809 kb on - strandat 3493.809 kb on - strandat 3493.809 kb on - strandat 3493.840 kb on - strandat 3493.841 kb on + strandat 3493.842 kb on - strandat 3493.842 kb on - strandat 3493.842 kb on - strandat 3493.848 kb on + strandat 3493.849 kb on - strandat 3493.849 kb on - strandat 3493.853 kb on - strandat 3493.941 kb on + strandat 3493.942 kb on - strandat 3493.952 kb on + strand, within OHPLBJKB_03346at 3494.075 kb on - strand, within OHPLBJKB_03346at 3494.075 kb on - strand, within OHPLBJKB_03346at 3494.075 kb on - strand, within OHPLBJKB_03346at 3494.075 kb on - strand, within OHPLBJKB_03346at 3494.075 kb on - strand, within OHPLBJKB_03346at 3494.161 kb on + strand, within OHPLBJKB_03346at 3494.234 kb on - strand, within OHPLBJKB_03346at 3494.234 kb on - strand, within OHPLBJKB_03346at 3494.396 kb on + strand, within OHPLBJKB_03346at 3494.397 kb on - strand, within OHPLBJKB_03346at 3494.457 kb on - strand, within OHPLBJKB_03346at 3494.469 kb on + strand, within OHPLBJKB_03346at 3494.477 kb on + strand, within OHPLBJKB_03346at 3494.481 kb on + strand, within OHPLBJKB_03346at 3494.482 kb on - strand, within OHPLBJKB_03346at 3494.482 kb on - strand, within OHPLBJKB_03346at 3494.522 kb on + strand, within OHPLBJKB_03346at 3494.601 kb on + strand, within OHPLBJKB_03346at 3494.603 kb on + strand, within OHPLBJKB_03346at 3494.604 kb on - strand, within OHPLBJKB_03346at 3494.616 kb on - strand, within OHPLBJKB_03346at 3494.703 kb on + strand, within OHPLBJKB_03346at 3494.726 kb on + strandat 3494.726 kb on + strandat 3494.727 kb on - strandat 3494.727 kb on - strandat 3494.727 kb on - strandat 3494.727 kb on - strandat 3494.727 kb on - strandat 3494.729 kb on + strandat 3494.729 kb on + strandat 3494.730 kb on - strandat 3494.730 kb on - strandat 3494.730 kb on - strandat 3494.730 kb on - strandat 3494.751 kb on + strandat 3494.751 kb on + strandat 3494.752 kb on - strandat 3494.787 kb on - strandat 3494.789 kb on + strandat 3494.790 kb on - strandat 3494.893 kb on - strandat 3494.915 kb on + strand, within OHPLBJKB_03347at 3494.960 kb on - strand, within OHPLBJKB_03347at 3494.992 kb on + strand, within OHPLBJKB_03347at 3494.993 kb on - strand, within OHPLBJKB_03347at 3495.020 kb on + strand, within OHPLBJKB_03347at 3495.020 kb on + strand, within OHPLBJKB_03347at 3495.033 kb on + strand, within OHPLBJKB_03347at 3495.083 kb on + strand, within OHPLBJKB_03347at 3495.084 kb on - strand, within OHPLBJKB_03347at 3495.084 kb on - strand, within OHPLBJKB_03347at 3495.114 kb on + strand, within OHPLBJKB_03347at 3495.114 kb on + strand, within OHPLBJKB_03347at 3495.115 kb on - strand, within OHPLBJKB_03347at 3495.115 kb on - strand, within OHPLBJKB_03347at 3495.115 kb on - strand, within OHPLBJKB_03347at 3495.115 kb on - strand, within OHPLBJKB_03347at 3495.115 kb on - strand, within OHPLBJKB_03347at 3495.206 kb on + strand, within OHPLBJKB_03347at 3495.207 kb on - strand, within OHPLBJKB_03347at 3495.207 kb on - strand, within OHPLBJKB_03347at 3495.227 kb on - strand, within OHPLBJKB_03347at 3495.236 kb on + strand, within OHPLBJKB_03347at 3495.237 kb on - strand, within OHPLBJKB_03347at 3495.251 kb on - strand, within OHPLBJKB_03347at 3495.282 kb on + strand, within OHPLBJKB_03347at 3495.282 kb on + strand, within OHPLBJKB_03347at 3495.289 kb on - strand, within OHPLBJKB_03347at 3495.289 kb on - strand, within OHPLBJKB_03347at 3495.306 kb on + strand, within OHPLBJKB_03347at 3495.320 kb on - strand, within OHPLBJKB_03347at 3495.320 kb on - strand, within OHPLBJKB_03347at 3495.368 kb on - strand, within OHPLBJKB_03347at 3495.377 kb on + strand, within OHPLBJKB_03347at 3495.424 kb on + strand, within OHPLBJKB_03347at 3495.424 kb on + strand, within OHPLBJKB_03347at 3495.425 kb on - strand, within OHPLBJKB_03347at 3495.425 kb on - strand, within OHPLBJKB_03347at 3495.474 kb on - strand, within OHPLBJKB_03347at 3495.552 kb on + strand, within OHPLBJKB_03347at 3495.635 kb on - strand, within OHPLBJKB_03347at 3495.648 kb on + strand, within OHPLBJKB_03347at 3495.648 kb on + strand, within OHPLBJKB_03347at 3495.649 kb on - strand, within OHPLBJKB_03347at 3495.649 kb on - strand, within OHPLBJKB_03347at 3495.653 kb on - strand, within OHPLBJKB_03347at 3495.735 kb on - strandat 3495.777 kb on + strandat 3495.777 kb on + strandat 3495.777 kb on + strandat 3495.777 kb on + strandat 3495.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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3,492,889 - OHPLBJKB_03345 0.17 +0.8
3,493,003 - OHPLBJKB_03345 0.27 +0.2
3,493,017 + OHPLBJKB_03345 0.29 +0.4
3,493,018 - OHPLBJKB_03345 0.29 -0.5
3,493,030 + OHPLBJKB_03345 0.30 -1.2
3,493,030 + OHPLBJKB_03345 0.30 +1.2
3,493,030 + OHPLBJKB_03345 0.30 +1.2
3,493,031 - OHPLBJKB_03345 0.30 +0.6
3,493,031 - OHPLBJKB_03345 0.30 +1.7
3,493,031 - OHPLBJKB_03345 0.30 -0.6
3,493,095 + OHPLBJKB_03345 0.36 +0.9
3,493,153 - OHPLBJKB_03345 0.42 -0.7
3,493,200 + OHPLBJKB_03345 0.46 +0.0
3,493,200 + OHPLBJKB_03345 0.46 +0.4
3,493,200 + OHPLBJKB_03345 0.46 -0.1
3,493,201 - OHPLBJKB_03345 0.46 -0.9
3,493,201 - OHPLBJKB_03345 0.46 -1.4
3,493,274 + OHPLBJKB_03345 0.53 +0.0
3,493,349 + OHPLBJKB_03345 0.60 -0.7
3,493,350 - OHPLBJKB_03345 0.60 -0.2
3,493,350 - OHPLBJKB_03345 0.60 -1.2
3,493,423 - OHPLBJKB_03345 0.67 +0.4
3,493,423 - OHPLBJKB_03345 0.67 +0.3
3,493,424 + OHPLBJKB_03345 0.68 -0.5
3,493,424 + OHPLBJKB_03345 0.68 +0.6
3,493,424 + OHPLBJKB_03345 0.68 -0.2
3,493,425 - OHPLBJKB_03345 0.68 -0.0
3,493,425 - OHPLBJKB_03345 0.68 +0.1
3,493,425 - OHPLBJKB_03345 0.68 -0.1
3,493,425 - OHPLBJKB_03345 0.68 -0.3
3,493,425 - OHPLBJKB_03345 0.68 -0.2
3,493,425 - OHPLBJKB_03345 0.68 +0.2
3,493,449 - OHPLBJKB_03345 0.70 -1.2
3,493,486 - OHPLBJKB_03345 0.73 -0.4
3,493,540 + OHPLBJKB_03345 0.79 +0.2
3,493,598 + OHPLBJKB_03345 0.84 +0.6
3,493,599 - OHPLBJKB_03345 0.84 -0.8
3,493,771 + +0.4
3,493,781 + +0.3
3,493,782 - +0.2
3,493,785 + -0.1
3,493,785 + +0.2
3,493,785 + -1.4
3,493,785 + +0.2
3,493,785 + -0.3
3,493,785 + -0.8
3,493,785 + +1.4
3,493,786 - -0.3
3,493,786 - -0.2
3,493,786 - -1.3
3,493,786 - +0.7
3,493,786 - +1.0
3,493,786 - +0.8
3,493,786 - -1.2
3,493,786 - -0.1
3,493,786 - +0.7
3,493,791 + +1.0
3,493,791 + +0.6
3,493,791 + +0.2
3,493,792 - -0.1
3,493,792 - +0.2
3,493,808 + +1.2
3,493,809 - -0.1
3,493,809 - -0.1
3,493,809 - -0.8
3,493,840 - -0.1
3,493,841 + +0.4
3,493,842 - -1.4
3,493,842 - -1.4
3,493,842 - -0.1
3,493,848 + +0.7
3,493,849 - +1.2
3,493,849 - +1.0
3,493,853 - +0.1
3,493,941 + -0.1
3,493,942 - -0.1
3,493,952 + OHPLBJKB_03346 0.11 -0.1
3,494,075 - OHPLBJKB_03346 0.23 +0.2
3,494,075 - OHPLBJKB_03346 0.23 -0.2
3,494,075 - OHPLBJKB_03346 0.23 +0.3
3,494,075 - OHPLBJKB_03346 0.23 -0.5
3,494,075 - OHPLBJKB_03346 0.23 -0.2
3,494,161 + OHPLBJKB_03346 0.32 +0.1
3,494,234 - OHPLBJKB_03346 0.40 +1.3
3,494,234 - OHPLBJKB_03346 0.40 +0.7
3,494,396 + OHPLBJKB_03346 0.57 +1.3
3,494,397 - OHPLBJKB_03346 0.57 -0.3
3,494,457 - OHPLBJKB_03346 0.63 +0.0
3,494,469 + OHPLBJKB_03346 0.65 -1.3
3,494,477 + OHPLBJKB_03346 0.65 -0.0
3,494,481 + OHPLBJKB_03346 0.66 -0.3
3,494,482 - OHPLBJKB_03346 0.66 +0.7
3,494,482 - OHPLBJKB_03346 0.66 +0.9
3,494,522 + OHPLBJKB_03346 0.70 +0.5
3,494,601 + OHPLBJKB_03346 0.78 -0.9
3,494,603 + OHPLBJKB_03346 0.79 +0.7
3,494,604 - OHPLBJKB_03346 0.79 +1.2
3,494,616 - OHPLBJKB_03346 0.80 +0.1
3,494,703 + OHPLBJKB_03346 0.89 +0.5
3,494,726 + -1.2
3,494,726 + +0.6
3,494,727 - +0.1
3,494,727 - -0.6
3,494,727 - +0.3
3,494,727 - -0.6
3,494,727 - +0.3
3,494,729 + +0.5
3,494,729 + -0.6
3,494,730 - +0.6
3,494,730 - -0.5
3,494,730 - -0.4
3,494,730 - -0.6
3,494,751 + +0.5
3,494,751 + +0.2
3,494,752 - +0.8
3,494,787 - -2.0
3,494,789 + -0.3
3,494,790 - -0.5
3,494,893 - -0.3
3,494,915 + OHPLBJKB_03347 0.11 -0.8
3,494,960 - OHPLBJKB_03347 0.16 +0.6
3,494,992 + OHPLBJKB_03347 0.19 -0.2
3,494,993 - OHPLBJKB_03347 0.19 +0.1
3,495,020 + OHPLBJKB_03347 0.22 +0.1
3,495,020 + OHPLBJKB_03347 0.22 +1.2
3,495,033 + OHPLBJKB_03347 0.24 +0.6
3,495,083 + OHPLBJKB_03347 0.29 +0.5
3,495,084 - OHPLBJKB_03347 0.29 +0.7
3,495,084 - OHPLBJKB_03347 0.29 -0.6
3,495,114 + OHPLBJKB_03347 0.32 +0.1
3,495,114 + OHPLBJKB_03347 0.32 -0.2
3,495,115 - OHPLBJKB_03347 0.32 +0.6
3,495,115 - OHPLBJKB_03347 0.32 -0.8
3,495,115 - OHPLBJKB_03347 0.32 -1.2
3,495,115 - OHPLBJKB_03347 0.32 -0.4
3,495,115 - OHPLBJKB_03347 0.32 +1.0
3,495,206 + OHPLBJKB_03347 0.41 +0.2
3,495,207 - OHPLBJKB_03347 0.41 -1.0
3,495,207 - OHPLBJKB_03347 0.41 -0.2
3,495,227 - OHPLBJKB_03347 0.44 -1.9
3,495,236 + OHPLBJKB_03347 0.44 -0.4
3,495,237 - OHPLBJKB_03347 0.45 +0.4
3,495,251 - OHPLBJKB_03347 0.46 +0.9
3,495,282 + OHPLBJKB_03347 0.49 +0.6
3,495,282 + OHPLBJKB_03347 0.49 +0.9
3,495,289 - OHPLBJKB_03347 0.50 -0.4
3,495,289 - OHPLBJKB_03347 0.50 +0.9
3,495,306 + OHPLBJKB_03347 0.52 +0.7
3,495,320 - OHPLBJKB_03347 0.53 -0.1
3,495,320 - OHPLBJKB_03347 0.53 +0.2
3,495,368 - OHPLBJKB_03347 0.58 -2.4
3,495,377 + OHPLBJKB_03347 0.59 +0.5
3,495,424 + OHPLBJKB_03347 0.64 +0.0
3,495,424 + OHPLBJKB_03347 0.64 +0.3
3,495,425 - OHPLBJKB_03347 0.64 -0.4
3,495,425 - OHPLBJKB_03347 0.64 +0.6
3,495,474 - OHPLBJKB_03347 0.69 +0.2
3,495,552 + OHPLBJKB_03347 0.77 +0.5
3,495,635 - OHPLBJKB_03347 0.85 +0.3
3,495,648 + OHPLBJKB_03347 0.87 -0.1
3,495,648 + OHPLBJKB_03347 0.87 +0.5
3,495,649 - OHPLBJKB_03347 0.87 -0.8
3,495,649 - OHPLBJKB_03347 0.87 -2.4
3,495,653 - OHPLBJKB_03347 0.87 +0.4
3,495,735 - -0.9
3,495,777 + -0.4
3,495,777 + +0.4
3,495,777 + +0.8
3,495,777 + +0.1
3,495,778 - +0.3

Or see this region's nucleotide sequence