Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02430

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02428 and OHPLBJKB_02429 are separated by 29 nucleotidesOHPLBJKB_02429 and OHPLBJKB_02430 are separated by 104 nucleotidesOHPLBJKB_02430 and OHPLBJKB_02431 are separated by 39 nucleotidesOHPLBJKB_02431 and OHPLBJKB_02432 are separated by 223 nucleotides OHPLBJKB_02428: OHPLBJKB_02428 - hypothetical protein, at 2,541,924 to 2,542,667 _02428 OHPLBJKB_02429: OHPLBJKB_02429 - putative intracellular septation protein A, at 2,542,697 to 2,543,236 _02429 OHPLBJKB_02430: OHPLBJKB_02430 - putative acyl-CoA thioester hydrolase, at 2,543,341 to 2,543,739 _02430 OHPLBJKB_02431: OHPLBJKB_02431 - Protein TonB, at 2,543,779 to 2,544,498 _02431 OHPLBJKB_02432: OHPLBJKB_02432 - Protein YciI, at 2,544,722 to 2,545,018 _02432 Position (kb) 2543 2544Strain fitness (log2 ratio) -1 0 1at 2542.379 kb on + strand, within OHPLBJKB_02428at 2542.379 kb on + strand, within OHPLBJKB_02428at 2542.460 kb on + strand, within OHPLBJKB_02428at 2542.632 kb on + strandat 2542.632 kb on + strandat 2542.649 kb on + strandat 2542.649 kb on + strandat 2542.650 kb on - strandat 2542.672 kb on - strandat 2542.763 kb on + strand, within OHPLBJKB_02429at 2542.763 kb on + strand, within OHPLBJKB_02429at 2542.918 kb on + strand, within OHPLBJKB_02429at 2543.198 kb on + strandat 2543.198 kb on + strandat 2543.200 kb on + strandat 2543.200 kb on + strandat 2543.227 kb on + strandat 2543.269 kb on - strandat 2543.297 kb on + strandat 2543.297 kb on + strandat 2543.300 kb on + strandat 2543.300 kb on + strandat 2543.300 kb on + strandat 2543.300 kb on + strandat 2543.300 kb on + strandat 2543.300 kb on + strandat 2543.300 kb on + strandat 2543.301 kb on - strandat 2543.326 kb on + strandat 2543.326 kb on + strandat 2543.337 kb on + strandat 2543.338 kb on - strandat 2543.346 kb on + strandat 2543.347 kb on - strandat 2543.355 kb on + strandat 2543.355 kb on + strandat 2543.355 kb on + strandat 2543.356 kb on - strandat 2543.356 kb on - strandat 2543.356 kb on - strandat 2543.385 kb on + strand, within OHPLBJKB_02430at 2543.386 kb on - strand, within OHPLBJKB_02430at 2543.502 kb on - strand, within OHPLBJKB_02430at 2543.569 kb on + strand, within OHPLBJKB_02430at 2543.610 kb on + strand, within OHPLBJKB_02430at 2543.613 kb on + strand, within OHPLBJKB_02430at 2543.614 kb on - strand, within OHPLBJKB_02430at 2543.665 kb on - strand, within OHPLBJKB_02430at 2543.681 kb on + strand, within OHPLBJKB_02430at 2543.681 kb on + strand, within OHPLBJKB_02430at 2543.685 kb on + strand, within OHPLBJKB_02430at 2543.685 kb on + strand, within OHPLBJKB_02430at 2543.685 kb on + strand, within OHPLBJKB_02430at 2543.685 kb on + strand, within OHPLBJKB_02430at 2543.685 kb on + strand, within OHPLBJKB_02430at 2543.685 kb on + strand, within OHPLBJKB_02430at 2543.686 kb on - strand, within OHPLBJKB_02430at 2543.686 kb on - strand, within OHPLBJKB_02430at 2543.686 kb on - strand, within OHPLBJKB_02430at 2543.686 kb on - strand, within OHPLBJKB_02430at 2543.686 kb on - strand, within OHPLBJKB_02430at 2543.689 kb on + strand, within OHPLBJKB_02430at 2543.689 kb on + strand, within OHPLBJKB_02430at 2543.689 kb on + strand, within OHPLBJKB_02430at 2543.689 kb on + strand, within OHPLBJKB_02430at 2543.727 kb on - strandat 2543.738 kb on - strandat 2543.741 kb on - strandat 2543.781 kb on - strandat 2543.927 kb on - strand, within OHPLBJKB_02431at 2544.032 kb on - strand, within OHPLBJKB_02431at 2544.090 kb on + strand, within OHPLBJKB_02431at 2544.210 kb on + strand, within OHPLBJKB_02431at 2544.386 kb on - strand, within OHPLBJKB_02431at 2544.386 kb on - strand, within OHPLBJKB_02431at 2544.394 kb on - strand, within OHPLBJKB_02431at 2544.413 kb on + strand, within OHPLBJKB_02431at 2544.413 kb on + strand, within OHPLBJKB_02431at 2544.508 kb on - strandat 2544.508 kb on - strandat 2544.560 kb on + strandat 2544.687 kb on + strandat 2544.688 kb on - strandat 2544.692 kb on + strandat 2544.693 kb on - strandat 2544.728 kb on + strandat 2544.728 kb on + strandat 2544.728 kb on + strandat 2544.733 kb on + strandat 2544.733 kb on + strandat 2544.733 kb on + strandat 2544.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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2,542,379 + OHPLBJKB_02428 0.61 +1.5
2,542,379 + OHPLBJKB_02428 0.61 +0.1
2,542,460 + OHPLBJKB_02428 0.72 +0.2
2,542,632 + +1.2
2,542,632 + -0.9
2,542,649 + +0.4
2,542,649 + +0.4
2,542,650 - +1.1
2,542,672 - -0.2
2,542,763 + OHPLBJKB_02429 0.12 -0.5
2,542,763 + OHPLBJKB_02429 0.12 -0.2
2,542,918 + OHPLBJKB_02429 0.41 +0.3
2,543,198 + -1.5
2,543,198 + +0.1
2,543,200 + -0.9
2,543,200 + -1.7
2,543,227 + -0.3
2,543,269 - -0.1
2,543,297 + +0.2
2,543,297 + -0.8
2,543,300 + +0.4
2,543,300 + -0.7
2,543,300 + -0.1
2,543,300 + -0.2
2,543,300 + -0.5
2,543,300 + -0.7
2,543,300 + -0.4
2,543,301 - -1.7
2,543,326 + -0.3
2,543,326 + +0.8
2,543,337 + -0.7
2,543,338 - +0.5
2,543,346 + -0.3
2,543,347 - +0.3
2,543,355 + +0.8
2,543,355 + +0.1
2,543,355 + -0.1
2,543,356 - -0.4
2,543,356 - -0.9
2,543,356 - +1.1
2,543,385 + OHPLBJKB_02430 0.11 -0.1
2,543,386 - OHPLBJKB_02430 0.11 +0.1
2,543,502 - OHPLBJKB_02430 0.40 -0.6
2,543,569 + OHPLBJKB_02430 0.57 -1.7
2,543,610 + OHPLBJKB_02430 0.67 +0.3
2,543,613 + OHPLBJKB_02430 0.68 +0.3
2,543,614 - OHPLBJKB_02430 0.68 +0.2
2,543,665 - OHPLBJKB_02430 0.81 -0.7
2,543,681 + OHPLBJKB_02430 0.85 +0.1
2,543,681 + OHPLBJKB_02430 0.85 -0.4
2,543,685 + OHPLBJKB_02430 0.86 -0.1
2,543,685 + OHPLBJKB_02430 0.86 +0.0
2,543,685 + OHPLBJKB_02430 0.86 -0.9
2,543,685 + OHPLBJKB_02430 0.86 -0.4
2,543,685 + OHPLBJKB_02430 0.86 +0.3
2,543,685 + OHPLBJKB_02430 0.86 -0.5
2,543,686 - OHPLBJKB_02430 0.86 -1.5
2,543,686 - OHPLBJKB_02430 0.86 +1.1
2,543,686 - OHPLBJKB_02430 0.86 -0.1
2,543,686 - OHPLBJKB_02430 0.86 -1.5
2,543,686 - OHPLBJKB_02430 0.86 -0.6
2,543,689 + OHPLBJKB_02430 0.87 +0.3
2,543,689 + OHPLBJKB_02430 0.87 +0.4
2,543,689 + OHPLBJKB_02430 0.87 -0.3
2,543,689 + OHPLBJKB_02430 0.87 -0.2
2,543,727 - +0.4
2,543,738 - +1.1
2,543,741 - -0.3
2,543,781 - -1.7
2,543,927 - OHPLBJKB_02431 0.21 -0.4
2,544,032 - OHPLBJKB_02431 0.35 +1.7
2,544,090 + OHPLBJKB_02431 0.43 +1.1
2,544,210 + OHPLBJKB_02431 0.60 -0.7
2,544,386 - OHPLBJKB_02431 0.84 -0.5
2,544,386 - OHPLBJKB_02431 0.84 -0.1
2,544,394 - OHPLBJKB_02431 0.85 +1.1
2,544,413 + OHPLBJKB_02431 0.88 -1.1
2,544,413 + OHPLBJKB_02431 0.88 -0.5
2,544,508 - -0.6
2,544,508 - -0.7
2,544,560 + -0.8
2,544,687 + +0.7
2,544,688 - +0.1
2,544,692 + -0.2
2,544,693 - -0.7
2,544,728 + +0.9
2,544,728 + -0.3
2,544,728 + -0.7
2,544,733 + -0.9
2,544,733 + -0.9
2,544,733 + +0.1
2,544,737 + +0.2

Or see this region's nucleotide sequence