Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00485

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00483 and OHPLBJKB_00484 overlap by 4 nucleotidesOHPLBJKB_00484 and OHPLBJKB_00485 are separated by 75 nucleotidesOHPLBJKB_00485 and OHPLBJKB_00486 are separated by 16 nucleotidesOHPLBJKB_00486 and OHPLBJKB_00487 are separated by 183 nucleotides OHPLBJKB_00483: OHPLBJKB_00483 - N-acetylmannosamine kinase, at 496,961 to 497,836 _00483 OHPLBJKB_00484: OHPLBJKB_00484 - putative protein YhcH, at 497,833 to 498,297 _00484 OHPLBJKB_00485: OHPLBJKB_00485 - hypothetical protein, at 498,373 to 498,678 _00485 OHPLBJKB_00486: OHPLBJKB_00486 - Putative nuclease YhcG, at 498,695 to 499,174 _00486 OHPLBJKB_00487: OHPLBJKB_00487 - Glutamate synthase [NADPH] small chain, at 499,358 to 500,776 _00487 Position (kb) 498 499Strain fitness (log2 ratio) -2 -1 0 1 2at 497.428 kb on + strand, within OHPLBJKB_00483at 497.428 kb on + strand, within OHPLBJKB_00483at 497.429 kb on - strand, within OHPLBJKB_00483at 497.554 kb on + strand, within OHPLBJKB_00483at 497.554 kb on + strand, within OHPLBJKB_00483at 497.554 kb on + strand, within OHPLBJKB_00483at 497.554 kb on + strand, within OHPLBJKB_00483at 497.555 kb on - strand, within OHPLBJKB_00483at 497.617 kb on + strand, within OHPLBJKB_00483at 497.644 kb on + strand, within OHPLBJKB_00483at 497.644 kb on + strand, within OHPLBJKB_00483at 497.645 kb on - strand, within OHPLBJKB_00483at 497.726 kb on + strand, within OHPLBJKB_00483at 497.727 kb on - strand, within OHPLBJKB_00483at 497.796 kb on + strandat 497.796 kb on + strandat 497.797 kb on - strandat 497.849 kb on + strandat 497.850 kb on - strandat 497.850 kb on - strandat 497.910 kb on - strand, within OHPLBJKB_00484at 497.910 kb on - strand, within OHPLBJKB_00484at 497.989 kb on - strand, within OHPLBJKB_00484at 498.034 kb on + strand, within OHPLBJKB_00484at 498.034 kb on + strand, within OHPLBJKB_00484at 498.035 kb on - strand, within OHPLBJKB_00484at 498.035 kb on - strand, within OHPLBJKB_00484at 498.054 kb on - strand, within OHPLBJKB_00484at 498.054 kb on - strand, within OHPLBJKB_00484at 498.056 kb on + strand, within OHPLBJKB_00484at 498.057 kb on - strand, within OHPLBJKB_00484at 498.133 kb on + strand, within OHPLBJKB_00484at 498.176 kb on + strand, within OHPLBJKB_00484at 498.177 kb on - strand, within OHPLBJKB_00484at 498.177 kb on - strand, within OHPLBJKB_00484at 498.177 kb on - strand, within OHPLBJKB_00484at 498.177 kb on - strand, within OHPLBJKB_00484at 498.219 kb on + strand, within OHPLBJKB_00484at 498.220 kb on - strand, within OHPLBJKB_00484at 498.220 kb on - strand, within OHPLBJKB_00484at 498.255 kb on + strandat 498.255 kb on + strandat 498.256 kb on - strandat 498.276 kb on + strandat 498.288 kb on - strandat 498.301 kb on + strandat 498.305 kb on - strandat 498.305 kb on - strandat 498.394 kb on + strandat 498.395 kb on - strandat 498.411 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.419 kb on - strand, within OHPLBJKB_00485at 498.419 kb on - strand, within OHPLBJKB_00485at 498.419 kb on - strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.456 kb on + strand, within OHPLBJKB_00485at 498.457 kb on - strand, within OHPLBJKB_00485at 498.457 kb on - strand, within OHPLBJKB_00485at 498.459 kb on + strand, within OHPLBJKB_00485at 498.459 kb on + strand, within OHPLBJKB_00485at 498.459 kb on + strand, within OHPLBJKB_00485at 498.460 kb on - strand, within OHPLBJKB_00485at 498.468 kb on + strand, within OHPLBJKB_00485at 498.468 kb on + strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.474 kb on + strand, within OHPLBJKB_00485at 498.474 kb on + strand, within OHPLBJKB_00485at 498.541 kb on + strand, within OHPLBJKB_00485at 498.541 kb on + strand, within OHPLBJKB_00485at 498.558 kb on + strand, within OHPLBJKB_00485at 498.558 kb on + strand, within OHPLBJKB_00485at 498.559 kb on - strand, within OHPLBJKB_00485at 498.563 kb on - strand, within OHPLBJKB_00485at 498.646 kb on - strand, within OHPLBJKB_00485at 498.672 kb on - strandat 498.672 kb on - strandat 498.672 kb on - strandat 498.709 kb on - strandat 498.709 kb on - strandat 498.710 kb on + strandat 498.710 kb on + strandat 498.941 kb on - strand, within OHPLBJKB_00486at 498.941 kb on - strand, within OHPLBJKB_00486at 498.941 kb on - strand, within OHPLBJKB_00486at 498.941 kb on - strand, within OHPLBJKB_00486at 498.942 kb on + strand, within OHPLBJKB_00486at 498.942 kb on + strand, within OHPLBJKB_00486at 498.942 kb on + strand, within OHPLBJKB_00486at 498.943 kb on - strand, within OHPLBJKB_00486at 498.948 kb on - strand, within OHPLBJKB_00486at 498.953 kb on + strand, within OHPLBJKB_00486at 498.954 kb on - strand, within OHPLBJKB_00486at 498.954 kb on - strand, within OHPLBJKB_00486at 498.954 kb on - strand, within OHPLBJKB_00486at 498.978 kb on - strand, within OHPLBJKB_00486at 498.978 kb on - strand, within OHPLBJKB_00486at 499.051 kb on - strand, within OHPLBJKB_00486at 499.051 kb on - strand, within OHPLBJKB_00486at 499.051 kb on - strand, within OHPLBJKB_00486at 499.079 kb on - strand, within OHPLBJKB_00486at 499.083 kb on - strand, within OHPLBJKB_00486at 499.117 kb on + strand, within OHPLBJKB_00486at 499.117 kb on + strand, within OHPLBJKB_00486at 499.117 kb on + strand, within OHPLBJKB_00486at 499.118 kb on - strand, within OHPLBJKB_00486at 499.118 kb on - strand, within OHPLBJKB_00486at 499.120 kb on + strand, within OHPLBJKB_00486at 499.187 kb on + strandat 499.187 kb on + strandat 499.187 kb on + strandat 499.187 kb on + strandat 499.188 kb on - strandat 499.188 kb on - strandat 499.189 kb on + strandat 499.190 kb on - strandat 499.222 kb on - strandat 499.259 kb on - strandat 499.261 kb on + strandat 499.261 kb on + strandat 499.262 kb on - strandat 499.378 kb on + strandat 499.378 kb on + strandat 499.397 kb on - strandat 499.612 kb on + strand, within OHPLBJKB_00487at 499.612 kb on + strand, within OHPLBJKB_00487at 499.612 kb on + strand, within OHPLBJKB_00487at 499.613 kb on - strand, within OHPLBJKB_00487at 499.613 kb on - strand, within OHPLBJKB_00487

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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497,428 + OHPLBJKB_00483 0.53 +0.4
497,428 + OHPLBJKB_00483 0.53 -0.9
497,429 - OHPLBJKB_00483 0.53 -1.1
497,554 + OHPLBJKB_00483 0.68 -0.2
497,554 + OHPLBJKB_00483 0.68 +0.3
497,554 + OHPLBJKB_00483 0.68 -0.0
497,554 + OHPLBJKB_00483 0.68 +0.9
497,555 - OHPLBJKB_00483 0.68 -0.5
497,617 + OHPLBJKB_00483 0.75 +0.8
497,644 + OHPLBJKB_00483 0.78 -0.9
497,644 + OHPLBJKB_00483 0.78 +0.5
497,645 - OHPLBJKB_00483 0.78 +1.0
497,726 + OHPLBJKB_00483 0.87 +0.6
497,727 - OHPLBJKB_00483 0.87 -0.9
497,796 + +0.7
497,796 + +1.0
497,797 - -1.1
497,849 + -0.4
497,850 - -1.3
497,850 - +0.9
497,910 - OHPLBJKB_00484 0.17 +0.1
497,910 - OHPLBJKB_00484 0.17 +0.4
497,989 - OHPLBJKB_00484 0.34 -1.2
498,034 + OHPLBJKB_00484 0.43 +0.7
498,034 + OHPLBJKB_00484 0.43 -0.0
498,035 - OHPLBJKB_00484 0.43 +0.3
498,035 - OHPLBJKB_00484 0.43 +1.3
498,054 - OHPLBJKB_00484 0.48 +0.3
498,054 - OHPLBJKB_00484 0.48 +0.4
498,056 + OHPLBJKB_00484 0.48 +1.3
498,057 - OHPLBJKB_00484 0.48 +1.5
498,133 + OHPLBJKB_00484 0.65 +0.4
498,176 + OHPLBJKB_00484 0.74 +0.2
498,177 - OHPLBJKB_00484 0.74 -0.0
498,177 - OHPLBJKB_00484 0.74 +0.5
498,177 - OHPLBJKB_00484 0.74 -0.8
498,177 - OHPLBJKB_00484 0.74 -0.5
498,219 + OHPLBJKB_00484 0.83 +0.6
498,220 - OHPLBJKB_00484 0.83 +0.4
498,220 - OHPLBJKB_00484 0.83 -0.4
498,255 + +0.6
498,255 + -1.0
498,256 - -0.2
498,276 + +0.6
498,288 - -0.0
498,301 + +1.2
498,305 - -0.1
498,305 - -0.3
498,394 + -0.0
498,395 - +0.7
498,411 + OHPLBJKB_00485 0.12 -0.3
498,416 + OHPLBJKB_00485 0.14 -0.3
498,416 + OHPLBJKB_00485 0.14 +0.1
498,416 + OHPLBJKB_00485 0.14 -1.0
498,416 + OHPLBJKB_00485 0.14 +0.3
498,416 + OHPLBJKB_00485 0.14 -0.2
498,416 + OHPLBJKB_00485 0.14 -2.2
498,416 + OHPLBJKB_00485 0.14 +0.2
498,416 + OHPLBJKB_00485 0.14 +0.1
498,416 + OHPLBJKB_00485 0.14 -0.3
498,416 + OHPLBJKB_00485 0.14 -0.1
498,416 + OHPLBJKB_00485 0.14 +0.2
498,417 - OHPLBJKB_00485 0.14 +0.4
498,417 - OHPLBJKB_00485 0.14 -1.2
498,417 - OHPLBJKB_00485 0.14 +0.3
498,417 - OHPLBJKB_00485 0.14 -1.3
498,417 - OHPLBJKB_00485 0.14 -0.0
498,417 - OHPLBJKB_00485 0.14 -0.1
498,417 - OHPLBJKB_00485 0.14 +0.4
498,417 - OHPLBJKB_00485 0.14 +0.9
498,418 + OHPLBJKB_00485 0.15 -0.1
498,418 + OHPLBJKB_00485 0.15 -0.2
498,418 + OHPLBJKB_00485 0.15 -0.5
498,418 + OHPLBJKB_00485 0.15 +0.6
498,418 + OHPLBJKB_00485 0.15 -0.8
498,419 - OHPLBJKB_00485 0.15 -0.5
498,419 - OHPLBJKB_00485 0.15 -0.4
498,419 - OHPLBJKB_00485 0.15 -0.2
498,420 + OHPLBJKB_00485 0.15 -1.1
498,420 + OHPLBJKB_00485 0.15 -0.5
498,420 + OHPLBJKB_00485 0.15 -0.8
498,420 + OHPLBJKB_00485 0.15 -0.4
498,420 + OHPLBJKB_00485 0.15 -0.3
498,420 + OHPLBJKB_00485 0.15 +1.5
498,421 - OHPLBJKB_00485 0.16 -0.9
498,421 - OHPLBJKB_00485 0.16 -0.2
498,421 - OHPLBJKB_00485 0.16 -0.2
498,421 - OHPLBJKB_00485 0.16 +0.7
498,421 - OHPLBJKB_00485 0.16 +1.0
498,421 - OHPLBJKB_00485 0.16 -0.5
498,421 - OHPLBJKB_00485 0.16 -1.4
498,421 - OHPLBJKB_00485 0.16 +0.8
498,421 - OHPLBJKB_00485 0.16 -0.9
498,456 + OHPLBJKB_00485 0.27 +1.1
498,457 - OHPLBJKB_00485 0.27 -0.4
498,457 - OHPLBJKB_00485 0.27 +0.5
498,459 + OHPLBJKB_00485 0.28 -0.1
498,459 + OHPLBJKB_00485 0.28 +0.5
498,459 + OHPLBJKB_00485 0.28 +0.8
498,460 - OHPLBJKB_00485 0.28 -0.3
498,468 + OHPLBJKB_00485 0.31 -1.1
498,468 + OHPLBJKB_00485 0.31 -0.6
498,469 - OHPLBJKB_00485 0.31 +0.7
498,469 - OHPLBJKB_00485 0.31 +0.2
498,469 - OHPLBJKB_00485 0.31 +0.7
498,469 - OHPLBJKB_00485 0.31 +0.5
498,474 + OHPLBJKB_00485 0.33 -0.0
498,474 + OHPLBJKB_00485 0.33 +0.2
498,541 + OHPLBJKB_00485 0.55 +1.1
498,541 + OHPLBJKB_00485 0.55 +0.1
498,558 + OHPLBJKB_00485 0.60 -0.2
498,558 + OHPLBJKB_00485 0.60 -0.3
498,559 - OHPLBJKB_00485 0.61 -0.3
498,563 - OHPLBJKB_00485 0.62 +2.1
498,646 - OHPLBJKB_00485 0.89 -0.4
498,672 - -0.2
498,672 - +0.1
498,672 - -0.1
498,709 - -0.3
498,709 - +0.4
498,710 + +0.1
498,710 + +0.8
498,941 - OHPLBJKB_00486 0.51 +2.0
498,941 - OHPLBJKB_00486 0.51 +0.1
498,941 - OHPLBJKB_00486 0.51 +0.1
498,941 - OHPLBJKB_00486 0.51 -0.9
498,942 + OHPLBJKB_00486 0.51 +0.1
498,942 + OHPLBJKB_00486 0.51 +1.0
498,942 + OHPLBJKB_00486 0.51 +0.7
498,943 - OHPLBJKB_00486 0.52 +0.3
498,948 - OHPLBJKB_00486 0.53 -0.0
498,953 + OHPLBJKB_00486 0.54 -0.3
498,954 - OHPLBJKB_00486 0.54 +0.9
498,954 - OHPLBJKB_00486 0.54 -1.7
498,954 - OHPLBJKB_00486 0.54 +0.3
498,978 - OHPLBJKB_00486 0.59 -0.3
498,978 - OHPLBJKB_00486 0.59 -0.3
499,051 - OHPLBJKB_00486 0.74 +0.1
499,051 - OHPLBJKB_00486 0.74 +0.8
499,051 - OHPLBJKB_00486 0.74 +0.2
499,079 - OHPLBJKB_00486 0.80 -0.8
499,083 - OHPLBJKB_00486 0.81 +1.5
499,117 + OHPLBJKB_00486 0.88 +0.6
499,117 + OHPLBJKB_00486 0.88 +0.9
499,117 + OHPLBJKB_00486 0.88 +0.5
499,118 - OHPLBJKB_00486 0.88 -0.0
499,118 - OHPLBJKB_00486 0.88 -0.5
499,120 + OHPLBJKB_00486 0.89 -0.1
499,187 + -1.4
499,187 + +0.1
499,187 + +1.3
499,187 + -0.3
499,188 - -0.4
499,188 - -1.0
499,189 + +1.3
499,190 - +0.7
499,222 - +0.7
499,259 - +0.2
499,261 + +0.5
499,261 + +0.1
499,262 - +0.1
499,378 + +1.1
499,378 + -1.5
499,397 - +0.3
499,612 + OHPLBJKB_00487 0.18 +1.1
499,612 + OHPLBJKB_00487 0.18 +0.5
499,612 + OHPLBJKB_00487 0.18 +1.0
499,613 - OHPLBJKB_00487 0.18 -0.3
499,613 - OHPLBJKB_00487 0.18 +0.4

Or see this region's nucleotide sequence