Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25610 and LU632_RS25615 are separated by 94 nucleotides LU632_RS25615 and LU632_RS25620 are separated by 17 nucleotides LU632_RS25620 and LU632_RS25625 are separated by 77 nucleotides LU632_RS25625 and pilM overlap by 1 nucleotides pilM and LU632_RS25635 are separated by 18 nucleotides
LU632_RS25610: LU632_RS25610 - antitermination protein NusG, at 53,664 to 54,122
_RS25610
LU632_RS25615: LU632_RS25615 - hypothetical protein, at 54,217 to 54,465
_RS25615
LU632_RS25620: LU632_RS25620 - hypothetical protein, at 54,483 to 54,683
_RS25620
LU632_RS25625: LU632_RS25625 - toxin co-regulated pilus biosynthesis Q family protein, at 54,761 to 55,768
_RS25625
LU632_RS25630: pilM - type IV pilus biogenesis protein PilM, at 55,768 to 56,202
pilM
LU632_RS25635: LU632_RS25635 - PilN family type IVB pilus formation outer membrane protein, at 56,221 to 57,852
_RS25635
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 53.839 kb on + strand, within LU632_RS25610 at 53.950 kb on + strand, within LU632_RS25610 at 53.978 kb on - strand, within LU632_RS25610 at 54.010 kb on + strand, within LU632_RS25610 at 54.011 kb on - strand, within LU632_RS25610 at 54.012 kb on + strand, within LU632_RS25610 at 54.013 kb on - strand, within LU632_RS25610 at 54.013 kb on - strand, within LU632_RS25610 at 54.014 kb on + strand, within LU632_RS25610 at 54.015 kb on - strand, within LU632_RS25610 at 54.015 kb on - strand, within LU632_RS25610 at 54.024 kb on - strand, within LU632_RS25610 at 54.024 kb on - strand, within LU632_RS25610 at 54.098 kb on + strand at 54.138 kb on + strand at 54.138 kb on + strand at 54.139 kb on - strand at 54.140 kb on + strand at 54.153 kb on - strand at 54.188 kb on + strand at 54.206 kb on + strand at 54.206 kb on + strand at 54.206 kb on + strand at 54.206 kb on + strand at 54.207 kb on - strand at 54.207 kb on - strand at 54.207 kb on - strand at 54.217 kb on - strand at 54.237 kb on - strand at 54.253 kb on - strand, within LU632_RS25615 at 54.309 kb on + strand, within LU632_RS25615 at 54.315 kb on - strand, within LU632_RS25615 at 54.402 kb on + strand, within LU632_RS25615 at 54.403 kb on - strand, within LU632_RS25615 at 54.403 kb on - strand, within LU632_RS25615 at 54.403 kb on - strand, within LU632_RS25615 at 54.437 kb on + strand, within LU632_RS25615 at 54.463 kb on + strand at 54.464 kb on - strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.488 kb on + strand at 54.515 kb on + strand, within LU632_RS25620 at 54.545 kb on + strand, within LU632_RS25620 at 54.591 kb on - strand, within LU632_RS25620 at 54.628 kb on + strand, within LU632_RS25620 at 54.629 kb on - strand, within LU632_RS25620 at 54.672 kb on + strand at 54.673 kb on - strand at 54.684 kb on + strand at 54.685 kb on - strand at 54.773 kb on + strand at 54.773 kb on + strand at 54.774 kb on - strand at 54.882 kb on + strand, within LU632_RS25625 at 54.933 kb on + strand, within LU632_RS25625 at 54.933 kb on + strand, within LU632_RS25625 at 54.934 kb on - strand, within LU632_RS25625 at 54.969 kb on + strand, within LU632_RS25625 at 54.969 kb on + strand, within LU632_RS25625 at 54.969 kb on + strand, within LU632_RS25625 at 54.970 kb on - strand, within LU632_RS25625 at 55.014 kb on + strand, within LU632_RS25625 at 55.107 kb on + strand, within LU632_RS25625 at 55.141 kb on + strand, within LU632_RS25625 at 55.141 kb on + strand, within LU632_RS25625 at 55.142 kb on - strand, within LU632_RS25625 at 55.143 kb on + strand, within LU632_RS25625 at 55.143 kb on + strand, within LU632_RS25625 at 55.144 kb on - strand, within LU632_RS25625 at 55.208 kb on + strand, within LU632_RS25625 at 55.208 kb on + strand, within LU632_RS25625 at 55.209 kb on - strand, within LU632_RS25625 at 55.286 kb on + strand, within LU632_RS25625 at 55.286 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.288 kb on + strand, within LU632_RS25625 at 55.288 kb on + strand, within LU632_RS25625 at 55.538 kb on + strand, within LU632_RS25625 at 55.539 kb on - strand, within LU632_RS25625 at 55.539 kb on - strand, within LU632_RS25625 at 55.539 kb on - strand, within LU632_RS25625 at 55.617 kb on - strand, within LU632_RS25625 at 55.654 kb on + strand, within LU632_RS25625 at 55.655 kb on - strand, within LU632_RS25625 at 55.686 kb on - strand at 55.790 kb on + strand at 55.790 kb on + strand at 55.791 kb on - strand at 55.863 kb on + strand, within pilM at 55.864 kb on - strand, within pilM at 55.906 kb on + strand, within pilM at 55.907 kb on - strand, within pilM at 55.914 kb on + strand, within pilM at 55.914 kb on + strand, within pilM at 55.915 kb on - strand, within pilM at 55.927 kb on + strand, within pilM at 55.927 kb on + strand, within pilM at 55.927 kb on + strand, within pilM at 55.927 kb on + strand, within pilM at 55.928 kb on - strand, within pilM at 56.017 kb on - strand, within pilM at 56.017 kb on - strand, within pilM at 56.035 kb on + strand, within pilM at 56.035 kb on + strand, within pilM at 56.078 kb on + strand, within pilM at 56.079 kb on - strand, within pilM at 56.125 kb on - strand, within pilM at 56.145 kb on + strand, within pilM at 56.145 kb on + strand, within pilM at 56.146 kb on - strand, within pilM at 56.147 kb on + strand, within pilM at 56.147 kb on + strand, within pilM at 56.147 kb on + strand, within pilM at 56.147 kb on + strand, within pilM at 56.147 kb on + strand, within pilM at 56.148 kb on - strand, within pilM at 56.148 kb on - strand, within pilM at 56.148 kb on - strand, within pilM at 56.148 kb on - strand, within pilM at 56.148 kb on - strand, within pilM at 56.148 kb on - strand, within pilM at 56.182 kb on + strand at 56.183 kb on - strand at 56.183 kb on - strand at 56.221 kb on - strand at 56.226 kb on + strand at 56.226 kb on + strand at 56.226 kb on + strand at 56.226 kb on + strand at 56.227 kb on - strand at 56.302 kb on - strand at 56.333 kb on + strand at 56.407 kb on - strand, within LU632_RS25635 at 56.547 kb on + strand, within LU632_RS25635 at 56.691 kb on + strand, within LU632_RS25635 at 56.691 kb on + strand, within LU632_RS25635 at 56.742 kb on - strand, within LU632_RS25635
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 53,839 + LU632_RS25610 0.38 -0.5 53,950 + LU632_RS25610 0.62 +1.8 53,978 - LU632_RS25610 0.68 -1.2 54,010 + LU632_RS25610 0.75 -0.3 54,011 - LU632_RS25610 0.76 -0.1 54,012 + LU632_RS25610 0.76 -2.1 54,013 - LU632_RS25610 0.76 -0.3 54,013 - LU632_RS25610 0.76 +1.0 54,014 + LU632_RS25610 0.76 +1.2 54,015 - LU632_RS25610 0.76 +2.0 54,015 - LU632_RS25610 0.76 -2.5 54,024 - LU632_RS25610 0.78 -1.4 54,024 - LU632_RS25610 0.78 -1.1 54,098 + -0.6 54,138 + -2.7 54,138 + -0.4 54,139 - -1.6 54,140 + +0.4 54,153 - +3.6 54,188 + -1.9 54,206 + -1.7 54,206 + -2.1 54,206 + +1.1 54,206 + -0.8 54,207 - +1.0 54,207 - +1.2 54,207 - -0.5 54,217 - -0.8 54,237 - -2.2 54,253 - LU632_RS25615 0.14 -1.9 54,309 + LU632_RS25615 0.37 +1.1 54,315 - LU632_RS25615 0.39 +0.2 54,402 + LU632_RS25615 0.74 -0.5 54,403 - LU632_RS25615 0.75 -0.2 54,403 - LU632_RS25615 0.75 -0.8 54,403 - LU632_RS25615 0.75 +0.1 54,437 + LU632_RS25615 0.88 -1.7 54,463 + -0.1 54,464 - -1.7 54,482 + -1.7 54,482 + -0.2 54,482 + +0.1 54,482 + +2.3 54,482 + -2.7 54,482 + +0.4 54,482 + -0.5 54,482 + +2.0 54,483 - -0.8 54,483 - +1.1 54,483 - -2.1 54,483 - -1.2 54,483 - -0.9 54,483 - +0.8 54,483 - -1.5 54,483 - +2.1 54,488 + -1.6 54,515 + LU632_RS25620 0.16 -1.5 54,545 + LU632_RS25620 0.31 -0.3 54,591 - LU632_RS25620 0.54 +1.3 54,628 + LU632_RS25620 0.72 -1.4 54,629 - LU632_RS25620 0.73 -1.9 54,672 + +0.5 54,673 - +0.6 54,684 + -2.7 54,685 - -0.5 54,773 + +1.7 54,773 + -0.0 54,774 - -0.2 54,882 + LU632_RS25625 0.12 -1.6 54,933 + LU632_RS25625 0.17 +0.3 54,933 + LU632_RS25625 0.17 +1.3 54,934 - LU632_RS25625 0.17 +0.6 54,969 + LU632_RS25625 0.21 +1.1 54,969 + LU632_RS25625 0.21 +1.0 54,969 + LU632_RS25625 0.21 -1.8 54,970 - LU632_RS25625 0.21 +1.1 55,014 + LU632_RS25625 0.25 +1.1 55,107 + LU632_RS25625 0.34 -3.2 55,141 + LU632_RS25625 0.38 +1.1 55,141 + LU632_RS25625 0.38 +1.1 55,142 - LU632_RS25625 0.38 +1.1 55,143 + LU632_RS25625 0.38 -2.2 55,143 + LU632_RS25625 0.38 +0.1 55,144 - LU632_RS25625 0.38 -0.2 55,208 + LU632_RS25625 0.44 +0.8 55,208 + LU632_RS25625 0.44 -0.6 55,209 - LU632_RS25625 0.44 -0.4 55,286 + LU632_RS25625 0.52 -1.1 55,286 - LU632_RS25625 0.52 +2.9 55,287 - LU632_RS25625 0.52 -2.1 55,287 - LU632_RS25625 0.52 +2.6 55,287 - LU632_RS25625 0.52 +1.1 55,287 - LU632_RS25625 0.52 +1.3 55,287 - LU632_RS25625 0.52 -1.7 55,287 - LU632_RS25625 0.52 -2.9 55,287 - LU632_RS25625 0.52 -0.5 55,288 + LU632_RS25625 0.52 +1.1 55,288 + LU632_RS25625 0.52 +1.1 55,538 + LU632_RS25625 0.77 +0.6 55,539 - LU632_RS25625 0.77 -1.5 55,539 - LU632_RS25625 0.77 +0.6 55,539 - LU632_RS25625 0.77 +0.7 55,617 - LU632_RS25625 0.85 -0.1 55,654 + LU632_RS25625 0.89 -0.7 55,655 - LU632_RS25625 0.89 -0.6 55,686 - -1.5 55,790 + +0.5 55,790 + -2.0 55,791 - -0.5 55,863 + pilM LU632_RS25630 0.22 -1.8 55,864 - pilM LU632_RS25630 0.22 -0.5 55,906 + pilM LU632_RS25630 0.32 -0.2 55,907 - pilM LU632_RS25630 0.32 -0.0 55,914 + pilM LU632_RS25630 0.34 +0.1 55,914 + pilM LU632_RS25630 0.34 +0.0 55,915 - pilM LU632_RS25630 0.34 -1.2 55,927 + pilM LU632_RS25630 0.37 -1.7 55,927 + pilM LU632_RS25630 0.37 -0.1 55,927 + pilM LU632_RS25630 0.37 -2.5 55,927 + pilM LU632_RS25630 0.37 -1.2 55,928 - pilM LU632_RS25630 0.37 +0.7 56,017 - pilM LU632_RS25630 0.57 -0.2 56,017 - pilM LU632_RS25630 0.57 -0.1 56,035 + pilM LU632_RS25630 0.61 -3.6 56,035 + pilM LU632_RS25630 0.61 -0.9 56,078 + pilM LU632_RS25630 0.71 +1.1 56,079 - pilM LU632_RS25630 0.71 -2.4 56,125 - pilM LU632_RS25630 0.82 -0.4 56,145 + pilM LU632_RS25630 0.87 -1.5 56,145 + pilM LU632_RS25630 0.87 +2.1 56,146 - pilM LU632_RS25630 0.87 -0.3 56,147 + pilM LU632_RS25630 0.87 -2.1 56,147 + pilM LU632_RS25630 0.87 -3.1 56,147 + pilM LU632_RS25630 0.87 -1.9 56,147 + pilM LU632_RS25630 0.87 +0.7 56,147 + pilM LU632_RS25630 0.87 -1.4 56,148 - pilM LU632_RS25630 0.87 +0.9 56,148 - pilM LU632_RS25630 0.87 -1.0 56,148 - pilM LU632_RS25630 0.87 +1.7 56,148 - pilM LU632_RS25630 0.87 -2.6 56,148 - pilM LU632_RS25630 0.87 -2.5 56,148 - pilM LU632_RS25630 0.87 -2.7 56,182 + +1.0 56,183 - -1.7 56,183 - -0.5 56,221 - -0.9 56,226 + +1.1 56,226 + +1.0 56,226 + -1.7 56,226 + +2.7 56,227 - +0.8 56,302 - -0.6 56,333 + -1.6 56,407 - LU632_RS25635 0.11 +1.1 56,547 + LU632_RS25635 0.20 -1.7 56,691 + LU632_RS25635 0.29 -0.5 56,691 + LU632_RS25635 0.29 -0.4 56,742 - LU632_RS25635 0.32 +2.5
Or see this region's nucleotide sequence