Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25385

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
8,842	+				-0.8
8,930	+				+2.7
8,972	+		LU632_RS25380	0.12	-0.8
9,042	+		LU632_RS25380	0.19	-1.1
9,213	-		LU632_RS25380	0.37	+1.1
9,338	+		LU632_RS25380	0.51	-1.6
9,404	+		LU632_RS25380	0.57	+0.0
9,409	+		LU632_RS25380	0.58	-1.5
9,409	+		LU632_RS25380	0.58	+0.6
9,409	+		LU632_RS25380	0.58	-0.7
9,410	-		LU632_RS25380	0.58	+0.9
9,410	-		LU632_RS25380	0.58	+0.5
9,410	-		LU632_RS25380	0.58	-0.0
9,410	-		LU632_RS25380	0.58	-0.5
9,465	+		LU632_RS25380	0.64	-2.2
9,466	-		LU632_RS25380	0.64	-2.2
9,466	-		LU632_RS25380	0.64	-1.1
9,466	-		LU632_RS25380	0.64	-2.4
9,783	+				-0.9
9,784	-				+1.1
9,793	-				+1.4
9,816	+				-0.9
9,817	-				-1.5
9,982	+				-0.3
9,983	-				+1.0
9,995	+				+0.9
9,996	-				-2.0
9,996	-				-0.9
9,996	-				-0.8
9,996	-				-0.5
9,997	+				+0.5
9,998	-				+1.8
9,998	-				-0.5
9,998	-				-0.0
10,022	+				-1.8
10,052	+				+0.9
10,052	+				+0.9
10,052	+				-0.9
10,053	-				-1.2
10,117	+				+2.1
10,117	+				-2.4
10,121	+				+0.3
10,121	+				+4.1
10,121	+				-2.0
10,122	-				+1.2
10,122	-				+1.6
10,122	-				+0.2
10,301	-		LU632_RS25385	0.15	-0.1
10,301	-		LU632_RS25385	0.15	-0.9
10,352	+		LU632_RS25385	0.17	-2.5
10,353	-		LU632_RS25385	0.17	-0.3
10,354	+		LU632_RS25385	0.17	-1.7
10,564	+		LU632_RS25385	0.24	-1.2
10,565	-		LU632_RS25385	0.24	-0.2
10,650	+		LU632_RS25385	0.27	-0.5
10,650	+		LU632_RS25385	0.27	+0.2
10,650	+		LU632_RS25385	0.27	-0.9
10,651	-		LU632_RS25385	0.27	-0.3
10,651	-		LU632_RS25385	0.27	+0.9
10,651	-		LU632_RS25385	0.27	+1.1
10,651	-		LU632_RS25385	0.27	+5.1
10,651	-		LU632_RS25385	0.27	+0.7
10,953	+		LU632_RS25385	0.36	-0.2
10,953	+		LU632_RS25385	0.36	+0.1
10,996	+		LU632_RS25385	0.38	+0.4
10,997	-		LU632_RS25385	0.38	-0.5
11,017	-		LU632_RS25385	0.38	-1.2
11,068	+		LU632_RS25385	0.40	+1.0
11,229	+		LU632_RS25385	0.45	-2.1
11,229	+		LU632_RS25385	0.45	-0.6
11,230	-		LU632_RS25385	0.45	-0.1
11,239	-		LU632_RS25385	0.46	+3.5
11,415	+		LU632_RS25385	0.51	-0.5
11,415	+		LU632_RS25385	0.51	+1.7
11,415	+		LU632_RS25385	0.51	+0.3
11,567	-		LU632_RS25385	0.56	-0.1
11,567	-		LU632_RS25385	0.56	+0.0
11,567	-		LU632_RS25385	0.56	+1.5
11,624	+		LU632_RS25385	0.58	-1.5
11,624	+		LU632_RS25385	0.58	+2.6
11,624	+		LU632_RS25385	0.58	-0.2
11,730	-		LU632_RS25385	0.62	-2.0
11,825	+		LU632_RS25385	0.65	-1.2
11,825	-		LU632_RS25385	0.65	+2.4
11,826	-		LU632_RS25385	0.65	-1.7
11,833	+		LU632_RS25385	0.65	+0.6
11,834	-		LU632_RS25385	0.65	-2.4
11,954	+		LU632_RS25385	0.69	+0.4
12,029	+		LU632_RS25385	0.71	-1.5
12,029	+		LU632_RS25385	0.71	-1.4
12,030	-		LU632_RS25385	0.71	-0.9
12,030	-		LU632_RS25385	0.71	+3.3
12,030	-		LU632_RS25385	0.71	+0.3
12,030	-		LU632_RS25385	0.71	-0.3
12,030	-		LU632_RS25385	0.71	+0.4
12,030	-		LU632_RS25385	0.71	-0.5
12,032	-		LU632_RS25385	0.71	-3.0
12,065	+		LU632_RS25385	0.73	-0.9
12,100	+		LU632_RS25385	0.74	+0.4
12,101	-		LU632_RS25385	0.74	-0.5
12,184	+		LU632_RS25385	0.76	-1.2
12,184	+		LU632_RS25385	0.76	-0.9
12,184	+		LU632_RS25385	0.76	-0.9
12,184	+		LU632_RS25385	0.76	+0.3
12,184	+		LU632_RS25385	0.76	-0.5
12,184	+		LU632_RS25385	0.76	-0.5
12,184	+		LU632_RS25385	0.76	-1.8
12,185	-		LU632_RS25385	0.76	+0.1
12,185	-		LU632_RS25385	0.76	-1.9
12,185	-		LU632_RS25385	0.76	+0.4
12,185	-		LU632_RS25385	0.76	-0.7
12,185	-		LU632_RS25385	0.76	-0.3
12,185	-		LU632_RS25385	0.76	-1.1
12,185	-		LU632_RS25385	0.76	-3.2
12,188	+		LU632_RS25385	0.77	+1.5
12,188	+		LU632_RS25385	0.77	-0.3
12,188	+		LU632_RS25385	0.77	+0.9
12,188	+		LU632_RS25385	0.77	-1.9
12,188	+		LU632_RS25385	0.77	+2.6
12,188	+		LU632_RS25385	0.77	+0.6
12,189	-		LU632_RS25385	0.77	+0.1
12,189	-		LU632_RS25385	0.77	-0.5
12,189	-		LU632_RS25385	0.77	-0.0
12,189	-		LU632_RS25385	0.77	-0.8
12,189	-		LU632_RS25385	0.77	-0.5
12,249	+		LU632_RS25385	0.78	+0.1
12,250	-		LU632_RS25385	0.79	-0.3
12,272	+		LU632_RS25385	0.79	+0.5
12,273	-		LU632_RS25385	0.79	+2.1
12,376	+		LU632_RS25385	0.83	+1.6
12,376	+		LU632_RS25385	0.83	-0.2
12,427	-		LU632_RS25385	0.84	+0.8
12,440	+		LU632_RS25385	0.85	-2.0
12,440	+		LU632_RS25385	0.85	-0.1
12,441	-		LU632_RS25385	0.85	+1.6
12,488	+		LU632_RS25385	0.86	-0.9
12,489	-		LU632_RS25385	0.86	+0.8
12,517	-		LU632_RS25385	0.87	+0.0
12,517	-		LU632_RS25385	0.87	+0.1
12,553	+		LU632_RS25385	0.88	-0.7
12,554	-		LU632_RS25385	0.88	-2.5
12,554	-		LU632_RS25385	0.88	+0.7
12,554	-		LU632_RS25385	0.88	-0.7
12,649	-				+2.1
12,649	-				-0.5
12,667	+				-1.5
12,735	+				-0.7
12,735	+				-2.4
12,735	+				+0.1
12,735	+				-2.5
12,735	+				-1.2
12,735	+				-0.5
12,736	-				+2.5
12,736	-				-0.9
12,737	+				+0.2
12,737	+				-2.1
12,769	+				+1.1
12,769	+				-0.0
12,770	-				+0.6
12,770	-				-0.9
12,858	+				+0.1
12,858	+				-0.2
12,858	+				+1.5
12,859	-				-0.2
12,859	-				-1.2
12,859	-				-0.5
12,859	-				+1.1
12,859	-				-0.3
12,912	+				-2.5
12,975	+				-1.5
12,976	-				+0.4
13,074	+	traW	LU632_RS25390	0.12	-1.2
13,074	+	traW	LU632_RS25390	0.12	-0.8
13,074	+	traW	LU632_RS25390	0.12	+1.5
13,079	+	traW	LU632_RS25390	0.13	-1.0
13,080	-	traW	LU632_RS25390	0.13	+1.1
13,172	-	traW	LU632_RS25390	0.21	-0.8
13,172	-	traW	LU632_RS25390	0.21	-2.2
13,180	+	traW	LU632_RS25390	0.21	+0.1
13,180	+	traW	LU632_RS25390	0.21	-0.1
13,181	-	traW	LU632_RS25390	0.21	-0.5
13,222	+	traW	LU632_RS25390	0.25	-3.2
13,417	+	traW	LU632_RS25390	0.41	+0.7
13,418	-	traW	LU632_RS25390	0.41	+0.8
13,530	+	traW	LU632_RS25390	0.51	+0.1
13,531	-	traW	LU632_RS25390	0.51	-1.2
13,582	+	traW	LU632_RS25390	0.55	+1.1
13,583	-	traW	LU632_RS25390	0.55	-0.5
13,583	-	traW	LU632_RS25390	0.55	+0.4
13,583	-	traW	LU632_RS25390	0.55	-1.7
13,660	+	traW	LU632_RS25390	0.61	+0.1
13,661	-	traW	LU632_RS25390	0.61	-0.4