Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25365

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttraO and LU632_RS25365 are separated by 11 nucleotidesLU632_RS25365 and traQ overlap by 1 nucleotidestraQ and LU632_RS25375 are separated by 26 nucleotidesLU632_RS25375 and LU632_RS25380 are separated by 51 nucleotides LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061 traO LU632_RS25365: LU632_RS25365 - hypothetical protein, at 7,073 to 7,867 _RS25365 LU632_RS25370: traQ - conjugal transfer protein TraQ, at 7,867 to 8,394 traQ LU632_RS25375: LU632_RS25375 - hypothetical protein, at 8,421 to 8,804 _RS25375 LU632_RS25380: LU632_RS25380 - hypothetical protein, at 8,856 to 9,809 _RS25380 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6.239 kb on - strand, within traOat 6.277 kb on + strand, within traOat 6.278 kb on - strand, within traOat 6.432 kb on - strand, within traOat 6.528 kb on + strand, within traOat 6.529 kb on - strand, within traOat 6.545 kb on - strand, within traOat 6.545 kb on - strand, within traOat 6.585 kb on - strand, within traOat 6.611 kb on + strand, within traOat 6.611 kb on + strand, within traOat 6.612 kb on - strand, within traOat 6.626 kb on + strand, within traOat 6.695 kb on + strand, within traOat 6.695 kb on + strand, within traOat 6.695 kb on + strand, within traOat 6.696 kb on - strand, within traOat 6.696 kb on - strand, within traOat 6.754 kb on - strand, within traOat 6.754 kb on - strand, within traOat 6.754 kb on - strand, within traOat 6.767 kb on + strand, within traOat 6.968 kb on - strandat 7.051 kb on + strandat 7.051 kb on + strandat 7.052 kb on - strandat 7.052 kb on - strandat 7.052 kb on - strandat 7.052 kb on - strandat 7.212 kb on - strand, within LU632_RS25365at 7.251 kb on + strand, within LU632_RS25365at 7.252 kb on - strand, within LU632_RS25365at 7.258 kb on - strand, within LU632_RS25365at 7.265 kb on + strand, within LU632_RS25365at 7.265 kb on + strand, within LU632_RS25365at 7.360 kb on - strand, within LU632_RS25365at 7.495 kb on - strand, within LU632_RS25365at 7.612 kb on - strand, within LU632_RS25365at 7.695 kb on + strand, within LU632_RS25365at 7.695 kb on + strand, within LU632_RS25365at 7.695 kb on + strand, within LU632_RS25365at 7.696 kb on - strand, within LU632_RS25365at 7.714 kb on + strand, within LU632_RS25365at 7.714 kb on + strand, within LU632_RS25365at 7.714 kb on + strand, within LU632_RS25365at 7.714 kb on + strand, within LU632_RS25365at 7.714 kb on + strand, within LU632_RS25365at 7.715 kb on - strand, within LU632_RS25365at 7.715 kb on - strand, within LU632_RS25365at 7.715 kb on - strand, within LU632_RS25365at 7.715 kb on - strand, within LU632_RS25365at 7.932 kb on - strand, within traQat 8.010 kb on + strand, within traQat 8.089 kb on - strand, within traQat 8.140 kb on + strand, within traQat 8.141 kb on - strand, within traQat 8.234 kb on + strand, within traQat 8.234 kb on + strand, within traQat 8.234 kb on + strand, within traQat 8.235 kb on - strand, within traQat 8.235 kb on - strand, within traQat 8.235 kb on - strand, within traQat 8.392 kb on + strandat 8.400 kb on + strandat 8.643 kb on - strand, within LU632_RS25375at 8.645 kb on + strand, within LU632_RS25375at 8.654 kb on - strand, within LU632_RS25375at 8.842 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
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6,239 - traO LU632_RS25360 0.35 +0.1
6,277 + traO LU632_RS25360 0.38 -0.7
6,278 - traO LU632_RS25360 0.38 +2.8
6,432 - traO LU632_RS25360 0.50 +0.2
6,528 + traO LU632_RS25360 0.58 -0.4
6,529 - traO LU632_RS25360 0.58 -1.5
6,545 - traO LU632_RS25360 0.59 -0.8
6,545 - traO LU632_RS25360 0.59 -0.1
6,585 - traO LU632_RS25360 0.62 +0.9
6,611 + traO LU632_RS25360 0.64 +0.1
6,611 + traO LU632_RS25360 0.64 +0.1
6,612 - traO LU632_RS25360 0.64 -0.4
6,626 + traO LU632_RS25360 0.65 -1.2
6,695 + traO LU632_RS25360 0.71 -2.4
6,695 + traO LU632_RS25360 0.71 -0.2
6,695 + traO LU632_RS25360 0.71 -1.5
6,696 - traO LU632_RS25360 0.71 -0.9
6,696 - traO LU632_RS25360 0.71 -0.9
6,754 - traO LU632_RS25360 0.76 +1.1
6,754 - traO LU632_RS25360 0.76 +1.3
6,754 - traO LU632_RS25360 0.76 -1.3
6,767 + traO LU632_RS25360 0.77 +0.4
6,968 - +0.4
7,051 + +0.4
7,051 + -0.5
7,052 - -0.5
7,052 - -0.9
7,052 - -1.9
7,052 - -1.4
7,212 - LU632_RS25365 0.17 -0.5
7,251 + LU632_RS25365 0.22 +2.1
7,252 - LU632_RS25365 0.23 +0.4
7,258 - LU632_RS25365 0.23 +1.7
7,265 + LU632_RS25365 0.24 -0.7
7,265 + LU632_RS25365 0.24 +0.5
7,360 - LU632_RS25365 0.36 +0.4
7,495 - LU632_RS25365 0.53 -2.1
7,612 - LU632_RS25365 0.68 +0.1
7,695 + LU632_RS25365 0.78 -0.9
7,695 + LU632_RS25365 0.78 -1.3
7,695 + LU632_RS25365 0.78 -1.1
7,696 - LU632_RS25365 0.78 -2.6
7,714 + LU632_RS25365 0.81 -0.5
7,714 + LU632_RS25365 0.81 +0.4
7,714 + LU632_RS25365 0.81 +3.4
7,714 + LU632_RS25365 0.81 -0.5
7,714 + LU632_RS25365 0.81 -0.2
7,715 - LU632_RS25365 0.81 +0.4
7,715 - LU632_RS25365 0.81 +0.4
7,715 - LU632_RS25365 0.81 +1.5
7,715 - LU632_RS25365 0.81 -1.8
7,932 - traQ LU632_RS25370 0.12 -0.9
8,010 + traQ LU632_RS25370 0.27 -1.0
8,089 - traQ LU632_RS25370 0.42 -0.2
8,140 + traQ LU632_RS25370 0.52 -0.4
8,141 - traQ LU632_RS25370 0.52 -1.0
8,234 + traQ LU632_RS25370 0.70 +1.4
8,234 + traQ LU632_RS25370 0.70 +2.1
8,234 + traQ LU632_RS25370 0.70 -0.8
8,235 - traQ LU632_RS25370 0.70 +0.1
8,235 - traQ LU632_RS25370 0.70 -1.7
8,235 - traQ LU632_RS25370 0.70 +1.1
8,392 + -1.6
8,400 + -1.3
8,643 - LU632_RS25375 0.58 -0.6
8,645 + LU632_RS25375 0.58 -0.9
8,654 - LU632_RS25375 0.61 +0.7
8,842 + -0.8

Or see this region's nucleotide sequence