Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24945

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
4,759,131	+		LU632_RS24940	0.53	-0.5
4,759,146	+		LU632_RS24940	0.54	+0.2
4,759,147	-		LU632_RS24940	0.55	-0.2
4,759,179	+		LU632_RS24940	0.57	+0.5
4,759,186	-		LU632_RS24940	0.58	+1.5
4,759,198	+		LU632_RS24940	0.59	-1.0
4,759,198	+		LU632_RS24940	0.59	+0.1
4,759,198	+		LU632_RS24940	0.59	-0.5
4,759,200	+		LU632_RS24940	0.59	-0.5
4,759,200	+		LU632_RS24940	0.59	+2.5
4,759,200	+		LU632_RS24940	0.59	-0.2
4,759,201	-		LU632_RS24940	0.59	+0.7
4,759,201	-		LU632_RS24940	0.59	+0.4
4,759,201	-		LU632_RS24940	0.59	+0.8
4,759,204	+		LU632_RS24940	0.59	-2.0
4,759,204	+		LU632_RS24940	0.59	-1.7
4,759,204	+		LU632_RS24940	0.59	-2.1
4,759,204	+		LU632_RS24940	0.59	+4.1
4,759,204	+		LU632_RS24940	0.59	-1.1
4,759,205	-		LU632_RS24940	0.59	-1.0
4,759,220	+		LU632_RS24940	0.61	+0.3
4,759,221	-		LU632_RS24940	0.61	-1.1
4,759,228	+		LU632_RS24940	0.61	+1.2
4,759,229	-		LU632_RS24940	0.62	-2.4
4,759,229	-		LU632_RS24940	0.62	+0.4
4,759,239	+		LU632_RS24940	0.62	+0.1
4,759,249	+		LU632_RS24940	0.63	+1.3
4,759,249	+		LU632_RS24940	0.63	-0.9
4,759,250	-		LU632_RS24940	0.63	+0.2
4,759,297	-		LU632_RS24940	0.67	-1.3
4,759,297	-		LU632_RS24940	0.67	+2.2
4,759,388	+		LU632_RS24940	0.75	+3.5
4,759,449	+		LU632_RS24940	0.80	+2.7
4,759,449	+		LU632_RS24940	0.80	-0.4
4,759,449	+		LU632_RS24940	0.80	-0.4
4,759,450	-		LU632_RS24940	0.80	-1.4
4,759,484	+		LU632_RS24940	0.83	+1.2
4,759,485	-		LU632_RS24940	0.83	+2.8
4,759,637	+				+0.4
4,759,637	+				+0.6
4,759,638	-				+0.6
4,759,638	-				-1.3
4,759,638	-				+3.7
4,759,704	+				-2.1
4,759,704	+				+0.8
4,759,705	-				-1.1
4,759,719	+				+0.9
4,760,026	-				+0.5
4,760,026	-				-2.1
4,760,202	+		LU632_RS24945	0.40	+1.9
4,760,202	+		LU632_RS24945	0.40	+1.3
4,760,203	-		LU632_RS24945	0.40	-1.3
4,760,203	-		LU632_RS24945	0.40	+1.5
4,760,205	-		LU632_RS24945	0.41	-2.6
4,760,205	-		LU632_RS24945	0.41	-0.2
4,760,205	-		LU632_RS24945	0.41	+2.8
4,760,205	-		LU632_RS24945	0.41	-2.5
4,760,268	-		LU632_RS24945	0.58	-0.1
4,760,268	-		LU632_RS24945	0.58	-1.3
4,760,271	-		LU632_RS24945	0.59	+1.7
4,760,297	+		LU632_RS24945	0.66	-0.9
4,760,498	+				+0.8
4,760,499	-				-0.8
4,760,499	-				+0.7
4,760,611	+				+1.5
4,760,670	-				+0.5
4,760,675	+				-1.6
4,760,675	+				-2.2
4,760,675	+				-0.5
4,760,676	-				-1.8
4,760,676	-				+0.1
4,760,677	+				-0.0
4,760,678	-				+0.5
4,760,678	-				-1.2
4,760,678	-				-0.5
4,760,679	+				+1.8
4,760,679	+				-0.5
4,760,679	+				-1.3
4,760,679	+				+0.5
4,760,680	-				+1.3