Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24610

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS24600 and LU632_RS24605 are separated by 239 nucleotidesLU632_RS24605 and LU632_RS24610 are separated by 153 nucleotidesLU632_RS24610 and LU632_RS24615 are separated by 445 nucleotidesLU632_RS24615 and LU632_RS24620 are separated by 94 nucleotides LU632_RS24600: LU632_RS24600 - ribbon-helix-helix domain-containing protein, at 4,688,902 to 4,689,093 _RS24600 LU632_RS24605: LU632_RS24605 - hypothetical protein, at 4,689,333 to 4,689,878 _RS24605 LU632_RS24610: LU632_RS24610 - IS3 family transposase, at 4,690,032 to 4,691,152 _RS24610 LU632_RS24615: LU632_RS24615 - hypothetical protein, at 4,691,598 to 4,691,789 _RS24615 LU632_RS24620: LU632_RS24620 - transposase, at 4,691,884 to 4,692,450 _RS24620 Position (kb) 4690 4691 4692Strain fitness (log2 ratio) -2 -1 0 1 2at 4689.042 kb on + strand, within LU632_RS24600at 4689.042 kb on + strand, within LU632_RS24600at 4689.043 kb on - strand, within LU632_RS24600at 4689.252 kb on + strandat 4689.898 kb on - strandat 4689.908 kb on + strandat 4689.918 kb on + strandat 4689.919 kb on - strandat 4689.951 kb on + strandat 4689.951 kb on + strandat 4689.952 kb on - strandat 4689.952 kb on - strandat 4689.984 kb on - strandat 4691.159 kb on + strandat 4691.214 kb on + strandat 4691.214 kb on + strandat 4691.225 kb on - strandat 4691.225 kb on - strandat 4691.323 kb on - strandat 4691.464 kb on - strandat 4691.612 kb on - strandat 4691.887 kb on + strandat 4691.887 kb on + strandat 4691.889 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
remove
4,689,042 + LU632_RS24600 0.73 -2.7
4,689,042 + LU632_RS24600 0.73 +1.6
4,689,043 - LU632_RS24600 0.73 +2.4
4,689,252 + -1.3
4,689,898 - -1.3
4,689,908 + -0.7
4,689,918 + +1.1
4,689,919 - -2.6
4,689,951 + -2.5
4,689,951 + -1.0
4,689,952 - +0.4
4,689,952 - +0.8
4,689,984 - +0.3
4,691,159 + +1.5
4,691,214 + +0.6
4,691,214 + -0.2
4,691,225 - +0.8
4,691,225 - +0.2
4,691,323 - +0.7
4,691,464 - -0.8
4,691,612 - +0.6
4,691,887 + +2.5
4,691,887 + +0.9
4,691,889 + +0.5

Or see this region's nucleotide sequence