Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24600 and LU632_RS24605 are separated by 239 nucleotides LU632_RS24605 and LU632_RS24610 are separated by 153 nucleotides LU632_RS24610 and LU632_RS24615 are separated by 445 nucleotides LU632_RS24615 and LU632_RS24620 are separated by 94 nucleotides
LU632_RS24600: LU632_RS24600 - ribbon-helix-helix domain-containing protein, at 4,688,902 to 4,689,093
_RS24600
LU632_RS24605: LU632_RS24605 - hypothetical protein, at 4,689,333 to 4,689,878
_RS24605
LU632_RS24610: LU632_RS24610 - IS3 family transposase, at 4,690,032 to 4,691,152
_RS24610
LU632_RS24615: LU632_RS24615 - hypothetical protein, at 4,691,598 to 4,691,789
_RS24615
LU632_RS24620: LU632_RS24620 - transposase, at 4,691,884 to 4,692,450
_RS24620
Position (kb)
4690
4691
4692 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4689.042 kb on + strand, within LU632_RS24600 at 4689.042 kb on + strand, within LU632_RS24600 at 4689.043 kb on - strand, within LU632_RS24600 at 4689.252 kb on + strand at 4689.898 kb on - strand at 4689.908 kb on + strand at 4689.918 kb on + strand at 4689.919 kb on - strand at 4689.951 kb on + strand at 4689.951 kb on + strand at 4689.952 kb on - strand at 4689.952 kb on - strand at 4689.984 kb on - strand at 4691.159 kb on + strand at 4691.214 kb on + strand at 4691.214 kb on + strand at 4691.225 kb on - strand at 4691.225 kb on - strand at 4691.323 kb on - strand at 4691.464 kb on - strand at 4691.612 kb on - strand at 4691.887 kb on + strand at 4691.887 kb on + strand at 4691.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 4,689,042 + LU632_RS24600 0.73 -2.7 4,689,042 + LU632_RS24600 0.73 +1.6 4,689,043 - LU632_RS24600 0.73 +2.4 4,689,252 + -1.3 4,689,898 - -1.3 4,689,908 + -0.7 4,689,918 + +1.1 4,689,919 - -2.6 4,689,951 + -2.5 4,689,951 + -1.0 4,689,952 - +0.4 4,689,952 - +0.8 4,689,984 - +0.3 4,691,159 + +1.5 4,691,214 + +0.6 4,691,214 + -0.2 4,691,225 - +0.8 4,691,225 - +0.2 4,691,323 - +0.7 4,691,464 - -0.8 4,691,612 - +0.6 4,691,887 + +2.5 4,691,887 + +0.9 4,691,889 + +0.5
Or see this region's nucleotide sequence