Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24445

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
4,663,077	-				-2.7
4,663,077	-				-0.7
4,663,272	+				+1.3
4,663,280	+				-2.3
4,663,280	+				-1.3
4,663,280	+				-0.5
4,663,280	+				+0.8
4,663,282	+				+1.8
4,663,282	+				-0.2
4,663,282	+				-0.5
4,663,333	+				-2.0
4,663,343	+		LU632_RS24440	0.10	-2.0
4,663,343	+		LU632_RS24440	0.10	+0.8
4,663,343	+		LU632_RS24440	0.10	+0.5
4,663,343	+		LU632_RS24440	0.10	-1.2
4,663,344	-		LU632_RS24440	0.10	+0.9
4,663,344	-		LU632_RS24440	0.10	-1.3
4,663,344	-		LU632_RS24440	0.10	-0.1
4,663,344	-		LU632_RS24440	0.10	-0.3
4,663,344	-		LU632_RS24440	0.10	-0.8
4,663,344	-		LU632_RS24440	0.10	+3.8
4,663,344	-		LU632_RS24440	0.10	-0.2
4,663,391	+		LU632_RS24440	0.22	-1.1
4,663,392	-		LU632_RS24440	0.23	+1.1
4,663,392	-		LU632_RS24440	0.23	+1.5
4,663,392	-		LU632_RS24440	0.23	+4.5
4,663,475	+		LU632_RS24440	0.44	-2.2
4,663,570	+		LU632_RS24440	0.68	+0.5
4,663,652	-		LU632_RS24440	0.89	-1.0
4,663,652	-		LU632_RS24440	0.89	-0.8
4,663,652	-		LU632_RS24440	0.89	+2.5
4,663,719	+				-2.5
4,663,727	+				-1.2
4,663,727	+				-0.0
4,663,735	+				+3.8
4,663,779	-				+3.4
4,663,781	+				-0.2
4,663,781	+				-0.6
4,663,781	+				+1.0
4,663,781	+				+0.9
4,663,782	-				-0.4
4,663,784	-				+0.9
4,663,784	-				+1.1
4,663,784	-				-2.2
4,663,793	+				-0.4
4,663,793	+				-1.1
4,663,794	-				-0.8
4,663,794	-				+1.0
4,663,817	-				+1.1
4,663,852	+				-1.1
4,663,853	-				-0.1
4,663,853	-				+1.2
4,663,889	+				-0.7
4,663,889	+				-0.1
4,663,938	-				+0.7
4,664,041	+		LU632_RS24445	0.29	-2.5
4,664,041	+		LU632_RS24445	0.29	+1.5
4,664,094	+		LU632_RS24445	0.44	-0.1
4,664,305	-				+0.1
4,664,316	-				-0.6
4,664,334	+				+1.8
4,664,335	-				-0.1
4,664,478	+				-1.5
4,664,478	+				+1.1
4,664,636	+	hdfR	LU632_RS24450	0.28	-0.8
4,664,709	+	hdfR	LU632_RS24450	0.37	-1.8
4,664,789	-	hdfR	LU632_RS24450	0.47	-0.1
4,664,940	+	hdfR	LU632_RS24450	0.65	-1.6
4,664,940	+	hdfR	LU632_RS24450	0.65	+3.5
4,664,941	-	hdfR	LU632_RS24450	0.65	-2.8
4,664,941	-	hdfR	LU632_RS24450	0.65	-0.3
4,664,942	+	hdfR	LU632_RS24450	0.65	-1.1
4,664,942	+	hdfR	LU632_RS24450	0.65	-2.3
4,664,943	-	hdfR	LU632_RS24450	0.65	+0.2
4,665,017	-	hdfR	LU632_RS24450	0.74	-2.2
4,665,079	+	hdfR	LU632_RS24450	0.82	-1.1
4,665,113	-	hdfR	LU632_RS24450	0.86	-1.2
4,665,153	+				+0.3
4,665,154	-				-0.5
4,665,249	+				+1.5
4,665,249	+				-3.4
4,665,276	+				-1.1