Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23320 and LU632_RS23325 are separated by 600 nucleotides LU632_RS23325 and LU632_RS23330 overlap by 7 nucleotides LU632_RS23330 and LU632_RS23335 are separated by 9 nucleotides LU632_RS23335 and LU632_RS23340 overlap by 8 nucleotides LU632_RS23340 and sbmA are separated by 58 nucleotides
LU632_RS23320: LU632_RS23320 - methyl-accepting chemotaxis protein, at 4,443,421 to 4,444,280
_RS23320
LU632_RS23325: LU632_RS23325 - hypothetical protein, at 4,444,881 to 4,445,069
_RS23325
LU632_RS23330: LU632_RS23330 - dihydroxyacetone kinase subunit DhaK, at 4,445,063 to 4,445,956
_RS23330
LU632_RS23335: LU632_RS23335 - hypothetical protein, at 4,445,966 to 4,446,136
_RS23335
LU632_RS23340: LU632_RS23340 - dihydroxyacetone kinase subunit L, at 4,446,129 to 4,446,281
_RS23340
LU632_RS23345: sbmA - peptide antibiotic transporter SbmA, at 4,446,340 to 4,447,539
sbmA
Position (kb) 4445
4446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4444.159 kb on + strand, within LU632_RS23320 at 4444.160 kb on - strand, within LU632_RS23320 at 4444.160 kb on - strand, within LU632_RS23320 at 4444.191 kb on - strand, within LU632_RS23320 at 4444.215 kb on + strand at 4444.215 kb on + strand at 4444.215 kb on + strand at 4444.215 kb on + strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.220 kb on - strand at 4444.263 kb on - strand at 4444.266 kb on - strand at 4444.806 kb on + strand at 4444.928 kb on + strand, within LU632_RS23325 at 4444.931 kb on + strand, within LU632_RS23325 at 4444.931 kb on + strand, within LU632_RS23325 at 4444.932 kb on - strand, within LU632_RS23325 at 4444.964 kb on + strand, within LU632_RS23325 at 4444.965 kb on - strand, within LU632_RS23325 at 4444.988 kb on + strand, within LU632_RS23325 at 4445.135 kb on - strand at 4445.353 kb on - strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.752 kb on - strand, within LU632_RS23330 at 4445.955 kb on - strand at 4445.955 kb on - strand at 4446.027 kb on + strand, within LU632_RS23335 at 4446.115 kb on + strand, within LU632_RS23335 at 4446.116 kb on - strand, within LU632_RS23335 at 4446.128 kb on + strand at 4446.128 kb on + strand at 4446.203 kb on + strand, within LU632_RS23340 at 4446.279 kb on + strand at 4446.280 kb on - strand at 4446.377 kb on - strand at 4446.384 kb on + strand at 4446.386 kb on + strand at 4446.431 kb on + strand at 4446.465 kb on + strand, within sbmA at 4446.507 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.903 kb on + strand, within sbmA at 4446.907 kb on - strand, within sbmA at 4446.907 kb on - strand, within sbmA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 4,444,159 + LU632_RS23320 0.86 +2.8 4,444,160 - LU632_RS23320 0.86 +1.9 4,444,160 - LU632_RS23320 0.86 +0.0 4,444,191 - LU632_RS23320 0.90 -1.3 4,444,215 + -1.5 4,444,215 + +1.1 4,444,215 + +1.5 4,444,215 + -0.1 4,444,216 - +0.5 4,444,216 - -0.2 4,444,216 - +1.5 4,444,216 - -0.6 4,444,216 - +1.5 4,444,216 - -1.5 4,444,216 - +0.5 4,444,216 - -0.1 4,444,216 - +2.2 4,444,216 - -0.6 4,444,216 - +0.8 4,444,216 - +1.1 4,444,220 - -0.8 4,444,263 - -1.9 4,444,266 - +0.0 4,444,806 + +1.0 4,444,928 + LU632_RS23325 0.25 +1.0 4,444,931 + LU632_RS23325 0.26 -3.0 4,444,931 + LU632_RS23325 0.26 +1.5 4,444,932 - LU632_RS23325 0.27 +0.3 4,444,964 + LU632_RS23325 0.44 +0.1 4,444,965 - LU632_RS23325 0.44 +1.9 4,444,988 + LU632_RS23325 0.57 -0.9 4,445,135 - -0.4 4,445,353 - LU632_RS23330 0.32 +4.6 4,445,658 + LU632_RS23330 0.67 -0.3 4,445,658 + LU632_RS23330 0.67 -0.3 4,445,685 + LU632_RS23330 0.70 -0.1 4,445,685 + LU632_RS23330 0.70 -0.3 4,445,752 - LU632_RS23330 0.77 -1.3 4,445,955 - -1.3 4,445,955 - -0.6 4,446,027 + LU632_RS23335 0.36 +1.5 4,446,115 + LU632_RS23335 0.87 +0.5 4,446,116 - LU632_RS23335 0.88 +1.4 4,446,128 + -0.5 4,446,128 + +0.5 4,446,203 + LU632_RS23340 0.48 -2.1 4,446,279 + +0.3 4,446,280 - -0.7 4,446,377 - -1.1 4,446,384 + +0.6 4,446,386 + +0.6 4,446,431 + -3.0 4,446,465 + sbmA LU632_RS23345 0.10 -0.2 4,446,507 + sbmA LU632_RS23345 0.14 -2.9 4,446,581 + sbmA LU632_RS23345 0.20 +0.4 4,446,581 + sbmA LU632_RS23345 0.20 -3.0 4,446,581 + sbmA LU632_RS23345 0.20 +1.1 4,446,581 + sbmA LU632_RS23345 0.20 -3.0 4,446,582 - sbmA LU632_RS23345 0.20 +0.1 4,446,582 - sbmA LU632_RS23345 0.20 +0.1 4,446,903 + sbmA LU632_RS23345 0.47 +0.5 4,446,907 - sbmA LU632_RS23345 0.47 -0.1 4,446,907 - sbmA LU632_RS23345 0.47 -1.7
Or see this region's nucleotide sequence