Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22890 and pilM overlap by 1 nucleotides pilM and mrcA are separated by 151 nucleotides mrcA and tnpA are separated by 233 nucleotides tnpA and nudE are separated by 170 nucleotides
LU632_RS22890: LU632_RS22890 - PilN domain-containing protein, at 4,357,412 to 4,357,996
_RS22890
LU632_RS22895: pilM - pilus assembly protein PilM, at 4,357,996 to 4,358,820
pilM
LU632_RS22900: mrcA - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 4,358,972 to 4,361,518
mrcA
LU632_RS22905: tnpA - IS200/IS605 family transposase, at 4,361,752 to 4,362,183
tnpA
LU632_RS22910: nudE - ADP compounds hydrolase NudE, at 4,362,354 to 4,362,920
nudE
Position (kb) 4358
4359
4360
4361
4362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4358.171 kb on + strand, within pilM at 4358.171 kb on + strand, within pilM at 4358.249 kb on + strand, within pilM at 4358.250 kb on - strand, within pilM at 4358.250 kb on - strand, within pilM at 4358.307 kb on + strand, within pilM at 4358.307 kb on + strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.428 kb on + strand, within pilM at 4358.443 kb on + strand, within pilM at 4358.443 kb on + strand, within pilM at 4358.443 kb on + strand, within pilM at 4358.444 kb on - strand, within pilM at 4358.444 kb on - strand, within pilM at 4358.444 kb on - strand, within pilM at 4358.520 kb on - strand, within pilM at 4358.614 kb on - strand, within pilM at 4358.655 kb on + strand, within pilM at 4358.660 kb on - strand, within pilM at 4358.728 kb on + strand, within pilM at 4358.786 kb on - strand at 4358.786 kb on - strand at 4358.786 kb on - strand at 4358.786 kb on - strand at 4358.812 kb on - strand at 4358.919 kb on + strand at 4358.936 kb on + strand at 4361.551 kb on - strand at 4361.627 kb on + strand at 4361.627 kb on + strand at 4361.628 kb on - strand at 4361.628 kb on - strand at 4362.316 kb on + strand at 4362.320 kb on - strand at 4362.417 kb on - strand, within nudE at 4362.417 kb on - strand, within nudE at 4362.461 kb on + strand, within nudE
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 4,358,171 + pilM LU632_RS22895 0.21 -2.4 4,358,171 + pilM LU632_RS22895 0.21 +0.6 4,358,249 + pilM LU632_RS22895 0.31 +2.0 4,358,250 - pilM LU632_RS22895 0.31 +0.5 4,358,250 - pilM LU632_RS22895 0.31 +0.1 4,358,307 + pilM LU632_RS22895 0.38 -1.1 4,358,307 + pilM LU632_RS22895 0.38 -0.5 4,358,308 - pilM LU632_RS22895 0.38 +1.5 4,358,308 - pilM LU632_RS22895 0.38 -0.3 4,358,308 - pilM LU632_RS22895 0.38 +0.1 4,358,308 - pilM LU632_RS22895 0.38 -1.1 4,358,308 - pilM LU632_RS22895 0.38 -0.2 4,358,428 + pilM LU632_RS22895 0.52 +0.0 4,358,443 + pilM LU632_RS22895 0.54 +0.2 4,358,443 + pilM LU632_RS22895 0.54 -0.1 4,358,443 + pilM LU632_RS22895 0.54 -1.9 4,358,444 - pilM LU632_RS22895 0.54 +1.7 4,358,444 - pilM LU632_RS22895 0.54 -1.5 4,358,444 - pilM LU632_RS22895 0.54 -0.1 4,358,520 - pilM LU632_RS22895 0.64 +0.7 4,358,614 - pilM LU632_RS22895 0.75 -0.4 4,358,655 + pilM LU632_RS22895 0.80 +0.7 4,358,660 - pilM LU632_RS22895 0.80 -2.1 4,358,728 + pilM LU632_RS22895 0.89 -0.5 4,358,786 - +1.1 4,358,786 - -0.9 4,358,786 - +0.0 4,358,786 - -0.9 4,358,812 - +2.0 4,358,919 + -1.7 4,358,936 + -0.9 4,361,551 - +1.1 4,361,627 + +0.6 4,361,627 + -1.0 4,361,628 - -3.3 4,361,628 - +0.5 4,362,316 + +1.1 4,362,320 - +0.5 4,362,417 - nudE LU632_RS22910 0.11 -0.5 4,362,417 - nudE LU632_RS22910 0.11 -0.5 4,362,461 + nudE LU632_RS22910 0.19 -3.3
Or see this region's nucleotide sequence