Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22865
Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) |
|---|---|---|---|---|---|
| remove | |||||
| 4,352,351 | - | LU632_RS22860 | 0.14 | +0.8 | |
| 4,352,424 | - | LU632_RS22860 | 0.21 | +0.1 | |
| 4,352,465 | - | LU632_RS22860 | 0.25 | +1.4 | |
| 4,353,213 | - | -0.9 | |||
| 4,353,252 | - | -0.2 | |||
| 4,353,332 | - | -0.9 | |||
| 4,353,350 | - | -2.9 | |||
| 4,353,439 | - | aroB | LU632_RS22865 | 0.13 | +0.6 |
| 4,353,439 | - | aroB | LU632_RS22865 | 0.13 | -0.9 |
| 4,353,503 | - | aroB | LU632_RS22865 | 0.19 | -1.4 |
| 4,353,824 | - | aroB | LU632_RS22865 | 0.49 | -2.6 |
| 4,353,824 | - | aroB | LU632_RS22865 | 0.49 | -1.6 |
| 4,354,010 | - | aroB | LU632_RS22865 | 0.66 | -0.9 |
| 4,354,157 | - | aroB | LU632_RS22865 | 0.79 | -2.8 |
| 4,354,197 | - | aroB | LU632_RS22865 | 0.83 | +0.4 |
| 4,354,197 | - | aroB | LU632_RS22865 | 0.83 | -0.1 |
| 4,354,224 | - | aroB | LU632_RS22865 | 0.85 | -0.1 |
| 4,354,389 | - | -1.0 | |||
| 4,354,389 | - | -0.6 | |||
| 4,354,453 | - | +1.4 | |||
| 4,355,195 | - | +0.1 | |||
| 4,355,198 | + | +0.6 | |||
| 4,355,199 | - | -3.1 | |||
| 4,355,199 | - | -0.4 | |||
| 4,355,199 | - | -0.9 | |||
| 4,355,199 | - | -0.1 | |||
| 4,355,281 | - | -0.1 | |||
| 4,355,281 | - | -1.9 | |||
| 4,355,362 | + | -1.7 |
Or see this region's nucleotide sequence