Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt envC and LU632_RS21900 are separated by 2 nucleotides LU632_RS21900 and LU632_RS21905 are separated by 51 nucleotides
LU632_RS21895: envC - murein hydrolase activator EnvC, at 4,181,417 to 4,182,721
envC
LU632_RS21900: LU632_RS21900 - divergent polysaccharide deacetylase family protein, at 4,182,724 to 4,183,659
_RS21900
LU632_RS21905: LU632_RS21905 - glycosyltransferase, at 4,183,711 to 4,184,885
_RS21905
Position (kb) 4182
4183
4184 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4181.903 kb on - strand, within envC at 4181.995 kb on - strand, within envC at 4182.176 kb on - strand, within envC at 4182.241 kb on + strand, within envC at 4182.241 kb on + strand, within envC at 4182.280 kb on + strand, within envC at 4182.280 kb on + strand, within envC at 4182.284 kb on + strand, within envC at 4182.284 kb on + strand, within envC at 4182.285 kb on - strand, within envC at 4182.285 kb on - strand, within envC at 4182.285 kb on - strand, within envC at 4182.459 kb on + strand, within envC at 4182.460 kb on - strand, within envC at 4182.460 kb on - strand, within envC at 4182.484 kb on - strand, within envC at 4182.484 kb on - strand, within envC at 4182.547 kb on + strand, within envC at 4182.548 kb on - strand, within envC at 4182.558 kb on - strand, within envC at 4182.564 kb on - strand, within envC at 4182.564 kb on - strand, within envC at 4182.565 kb on + strand, within envC at 4182.600 kb on + strand at 4182.600 kb on + strand at 4182.719 kb on + strand at 4182.720 kb on - strand at 4182.738 kb on + strand at 4182.765 kb on - strand at 4182.769 kb on - strand at 4182.769 kb on - strand at 4182.769 kb on - strand at 4182.852 kb on - strand, within LU632_RS21900 at 4182.882 kb on - strand, within LU632_RS21900 at 4182.884 kb on + strand, within LU632_RS21900 at 4182.898 kb on + strand, within LU632_RS21900 at 4183.029 kb on - strand, within LU632_RS21900 at 4183.146 kb on - strand, within LU632_RS21900 at 4183.176 kb on + strand, within LU632_RS21900 at 4183.177 kb on - strand, within LU632_RS21900 at 4183.183 kb on - strand, within LU632_RS21900 at 4183.359 kb on + strand, within LU632_RS21900 at 4183.359 kb on + strand, within LU632_RS21900 at 4183.360 kb on - strand, within LU632_RS21900 at 4183.360 kb on - strand, within LU632_RS21900 at 4183.373 kb on + strand, within LU632_RS21900 at 4183.385 kb on + strand, within LU632_RS21900 at 4183.386 kb on - strand, within LU632_RS21900 at 4183.386 kb on - strand, within LU632_RS21900 at 4183.404 kb on + strand, within LU632_RS21900 at 4183.405 kb on - strand, within LU632_RS21900 at 4183.408 kb on - strand, within LU632_RS21900 at 4183.534 kb on - strand, within LU632_RS21900 at 4183.579 kb on - strand at 4183.667 kb on + strand at 4183.667 kb on + strand at 4183.667 kb on + strand at 4183.672 kb on + strand at 4183.688 kb on + strand at 4183.689 kb on - strand at 4183.691 kb on - strand at 4183.691 kb on - strand at 4183.691 kb on - strand at 4183.709 kb on + strand at 4183.710 kb on - strand at 4183.776 kb on + strand at 4183.776 kb on + strand at 4183.776 kb on + strand at 4183.776 kb on + strand at 4183.777 kb on - strand at 4183.777 kb on - strand at 4183.777 kb on - strand at 4183.777 kb on - strand at 4183.777 kb on - strand at 4183.777 kb on - strand at 4183.779 kb on + strand at 4183.779 kb on + strand at 4183.779 kb on + strand at 4183.779 kb on + strand at 4183.779 kb on + strand at 4183.780 kb on - strand at 4183.843 kb on - strand, within LU632_RS21905 at 4183.843 kb on - strand, within LU632_RS21905 at 4183.843 kb on - strand, within LU632_RS21905 at 4183.843 kb on - strand, within LU632_RS21905 at 4183.847 kb on - strand, within LU632_RS21905 at 4183.869 kb on + strand, within LU632_RS21905 at 4183.869 kb on + strand, within LU632_RS21905 at 4183.897 kb on - strand, within LU632_RS21905 at 4183.951 kb on - strand, within LU632_RS21905 at 4183.999 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.093 kb on + strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.094 kb on - strand, within LU632_RS21905 at 4184.095 kb on + strand, within LU632_RS21905 at 4184.095 kb on + strand, within LU632_RS21905 at 4184.096 kb on - strand, within LU632_RS21905 at 4184.116 kb on + strand, within LU632_RS21905 at 4184.130 kb on - strand, within LU632_RS21905 at 4184.164 kb on - strand, within LU632_RS21905 at 4184.269 kb on - strand, within LU632_RS21905 at 4184.343 kb on + strand, within LU632_RS21905 at 4184.368 kb on - strand, within LU632_RS21905 at 4184.439 kb on - strand, within LU632_RS21905 at 4184.439 kb on - strand, within LU632_RS21905 at 4184.531 kb on - strand, within LU632_RS21905 at 4184.533 kb on - strand, within LU632_RS21905 at 4184.572 kb on + strand, within LU632_RS21905
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 4,181,903 - envC LU632_RS21895 0.37 -0.6 4,181,995 - envC LU632_RS21895 0.44 -1.3 4,182,176 - envC LU632_RS21895 0.58 -1.8 4,182,241 + envC LU632_RS21895 0.63 +0.4 4,182,241 + envC LU632_RS21895 0.63 -2.4 4,182,280 + envC LU632_RS21895 0.66 +1.4 4,182,280 + envC LU632_RS21895 0.66 -0.9 4,182,284 + envC LU632_RS21895 0.66 -2.6 4,182,284 + envC LU632_RS21895 0.66 -1.1 4,182,285 - envC LU632_RS21895 0.67 -0.1 4,182,285 - envC LU632_RS21895 0.67 +1.2 4,182,285 - envC LU632_RS21895 0.67 -1.6 4,182,459 + envC LU632_RS21895 0.80 -0.6 4,182,460 - envC LU632_RS21895 0.80 +1.4 4,182,460 - envC LU632_RS21895 0.80 -2.3 4,182,484 - envC LU632_RS21895 0.82 -1.7 4,182,484 - envC LU632_RS21895 0.82 -3.7 4,182,547 + envC LU632_RS21895 0.87 -0.1 4,182,548 - envC LU632_RS21895 0.87 -0.6 4,182,558 - envC LU632_RS21895 0.87 +1.4 4,182,564 - envC LU632_RS21895 0.88 -1.1 4,182,564 - envC LU632_RS21895 0.88 -1.8 4,182,565 + envC LU632_RS21895 0.88 -2.0 4,182,600 + -3.3 4,182,600 + -2.3 4,182,719 + -0.7 4,182,720 - +1.4 4,182,738 + -0.9 4,182,765 - -1.9 4,182,769 - -0.5 4,182,769 - -0.9 4,182,769 - +1.0 4,182,852 - LU632_RS21900 0.14 -1.6 4,182,882 - LU632_RS21900 0.17 -0.9 4,182,884 + LU632_RS21900 0.17 +1.8 4,182,898 + LU632_RS21900 0.19 +0.4 4,183,029 - LU632_RS21900 0.33 -2.4 4,183,146 - LU632_RS21900 0.45 -1.5 4,183,176 + LU632_RS21900 0.48 -1.1 4,183,177 - LU632_RS21900 0.48 +0.5 4,183,183 - LU632_RS21900 0.49 -1.2 4,183,359 + LU632_RS21900 0.68 -0.4 4,183,359 + LU632_RS21900 0.68 +1.4 4,183,360 - LU632_RS21900 0.68 -0.7 4,183,360 - LU632_RS21900 0.68 +0.6 4,183,373 + LU632_RS21900 0.69 +0.0 4,183,385 + LU632_RS21900 0.71 -1.1 4,183,386 - LU632_RS21900 0.71 -0.8 4,183,386 - LU632_RS21900 0.71 +0.6 4,183,404 + LU632_RS21900 0.73 +0.9 4,183,405 - LU632_RS21900 0.73 +0.4 4,183,408 - LU632_RS21900 0.73 +1.4 4,183,534 - LU632_RS21900 0.87 -1.1 4,183,579 - +0.6 4,183,667 + +1.4 4,183,667 + -0.1 4,183,667 + -0.1 4,183,672 + +0.2 4,183,688 + -0.9 4,183,689 - +1.4 4,183,691 - -1.6 4,183,691 - -2.0 4,183,691 - -1.4 4,183,709 + -0.6 4,183,710 - -0.4 4,183,776 + -1.9 4,183,776 + -3.8 4,183,776 + +0.2 4,183,776 + +1.4 4,183,777 - +1.9 4,183,777 - -0.6 4,183,777 - -0.1 4,183,777 - -1.6 4,183,777 - +1.4 4,183,777 - +0.6 4,183,779 + +0.4 4,183,779 + +1.3 4,183,779 + -1.6 4,183,779 + +2.9 4,183,779 + -1.3 4,183,780 - -0.9 4,183,843 - LU632_RS21905 0.11 +1.1 4,183,843 - LU632_RS21905 0.11 -0.5 4,183,843 - LU632_RS21905 0.11 +0.3 4,183,843 - LU632_RS21905 0.11 +0.7 4,183,847 - LU632_RS21905 0.12 -1.0 4,183,869 + LU632_RS21905 0.13 -2.1 4,183,869 + LU632_RS21905 0.13 -2.6 4,183,897 - LU632_RS21905 0.16 -0.1 4,183,951 - LU632_RS21905 0.20 -0.2 4,183,999 + LU632_RS21905 0.25 -0.6 4,184,093 + LU632_RS21905 0.33 +0.7 4,184,093 + LU632_RS21905 0.33 +1.4 4,184,093 + LU632_RS21905 0.33 -0.3 4,184,093 + LU632_RS21905 0.33 +1.0 4,184,093 + LU632_RS21905 0.33 +1.4 4,184,093 + LU632_RS21905 0.33 +1.2 4,184,093 + LU632_RS21905 0.33 +4.6 4,184,093 + LU632_RS21905 0.33 -1.2 4,184,094 - LU632_RS21905 0.33 +0.5 4,184,094 - LU632_RS21905 0.33 +1.4 4,184,094 - LU632_RS21905 0.33 -2.3 4,184,094 - LU632_RS21905 0.33 +0.4 4,184,094 - LU632_RS21905 0.33 -0.2 4,184,094 - LU632_RS21905 0.33 +1.9 4,184,094 - LU632_RS21905 0.33 +1.3 4,184,094 - LU632_RS21905 0.33 -1.1 4,184,094 - LU632_RS21905 0.33 -0.1 4,184,095 + LU632_RS21905 0.33 +1.6 4,184,095 + LU632_RS21905 0.33 +0.4 4,184,096 - LU632_RS21905 0.33 -1.4 4,184,116 + LU632_RS21905 0.34 -1.9 4,184,130 - LU632_RS21905 0.36 +0.7 4,184,164 - LU632_RS21905 0.39 +1.4 4,184,269 - LU632_RS21905 0.47 +0.6 4,184,343 + LU632_RS21905 0.54 -0.2 4,184,368 - LU632_RS21905 0.56 -1.0 4,184,439 - LU632_RS21905 0.62 +0.9 4,184,439 - LU632_RS21905 0.62 -0.2 4,184,531 - LU632_RS21905 0.70 +1.4 4,184,533 - LU632_RS21905 0.70 +0.4 4,184,572 + LU632_RS21905 0.73 -0.1
Or see this region's nucleotide sequence