Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21180

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
4,045,473	+	dacB	LU632_RS21170	0.80	-0.6
4,045,481	-	dacB	LU632_RS21170	0.81	+0.8
4,045,486	+	dacB	LU632_RS21170	0.81	-1.9
4,045,487	-	dacB	LU632_RS21170	0.81	+0.8
4,045,487	-	dacB	LU632_RS21170	0.81	-0.3
4,045,518	+	dacB	LU632_RS21170	0.83	+0.6
4,045,519	-	dacB	LU632_RS21170	0.83	+0.1
4,045,519	-	dacB	LU632_RS21170	0.83	-0.7
4,045,519	-	dacB	LU632_RS21170	0.83	+2.1
4,045,559	-	dacB	LU632_RS21170	0.86	+0.9
4,045,584	+	dacB	LU632_RS21170	0.88	-1.5
4,045,595	+	dacB	LU632_RS21170	0.89	-0.7
4,045,596	-	dacB	LU632_RS21170	0.89	+1.7
4,045,665	-				-0.5
4,045,884	+	pmrA	LU632_RS21175	0.18	-0.3
4,045,894	+	pmrA	LU632_RS21175	0.20	-0.7
4,045,972	-	pmrA	LU632_RS21175	0.32	-0.3
4,045,980	-	pmrA	LU632_RS21175	0.33	-0.7
4,046,053	+	pmrA	LU632_RS21175	0.44	-0.3
4,046,053	+	pmrA	LU632_RS21175	0.44	+2.5
4,046,106	-	pmrA	LU632_RS21175	0.52	+0.7
4,046,138	+	pmrA	LU632_RS21175	0.57	+0.2
4,046,154	+	pmrA	LU632_RS21175	0.59	+0.4
4,046,299	-	pmrA	LU632_RS21175	0.81	-1.3
4,046,340	+	pmrA	LU632_RS21175	0.87	-1.0
4,046,340	+	pmrA	LU632_RS21175	0.87	+0.4
4,046,340	+	pmrA	LU632_RS21175	0.87	+0.6
4,046,341	-	pmrA	LU632_RS21175	0.87	+0.5
4,046,341	-	pmrA	LU632_RS21175	0.87	+0.7
4,046,341	-	pmrA	LU632_RS21175	0.87	-0.3
4,046,342	+	pmrA	LU632_RS21175	0.87	+0.7
4,046,342	+	pmrA	LU632_RS21175	0.87	-0.9
4,046,342	+	pmrA	LU632_RS21175	0.87	+1.1
4,046,343	-	pmrA	LU632_RS21175	0.88	+1.6
4,046,343	-	pmrA	LU632_RS21175	0.88	-0.3
4,046,343	-	pmrA	LU632_RS21175	0.88	+0.3
4,046,343	-	pmrA	LU632_RS21175	0.88	-0.7
4,046,343	-	pmrA	LU632_RS21175	0.88	+0.0
4,046,343	-	pmrA	LU632_RS21175	0.88	-2.2
4,046,346	+	pmrA	LU632_RS21175	0.88	-0.0
4,046,347	-	pmrA	LU632_RS21175	0.88	+2.3
4,046,358	+				-1.5
4,046,379	+				+3.6
4,046,429	+				+0.1
4,046,446	+				-1.7
4,046,446	+				+3.9
4,046,447	-				-0.7
4,046,450	+				+0.7
4,046,451	-				-2.4
4,046,486	+		LU632_RS21180	0.11	+2.7
4,046,494	+		LU632_RS21180	0.12	+0.6
4,046,495	-		LU632_RS21180	0.13	+1.5
4,046,588	-		LU632_RS21180	0.29	+0.2
4,046,666	-		LU632_RS21180	0.42	+0.4
4,046,676	-		LU632_RS21180	0.44	-2.1
4,046,686	+		LU632_RS21180	0.45	-0.7
4,046,696	-		LU632_RS21180	0.47	-1.5
4,046,966	-				-2.1
4,046,966	-				-1.0
4,047,010	+				-0.8
4,047,010	+				+0.1
4,047,011	-				-0.0
4,047,011	-				-0.9
4,047,012	+				-0.2
4,047,012	+				-0.4
4,047,013	-				-2.8
4,047,069	+				-0.3
4,047,069	+				+0.7
4,047,069	+				+0.0
4,047,094	-				+1.3
4,047,124	+				-0.3
4,047,124	+				+0.5
4,047,125	-				-0.5
4,047,125	-				+1.5
4,047,125	-				-1.5
4,047,184	+				+0.3
4,047,185	-				-0.9
4,047,195	-				-0.3
4,047,248	-				-1.3
4,047,314	-				-2.1
4,047,369	+				-0.4
4,047,373	-				+0.0
4,047,548	+				-2.4
4,047,549	-				-0.5