Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20970

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
4,005,070	-		LU632_RS20965	0.40	-0.3
4,005,096	+		LU632_RS20965	0.41	+1.0
4,005,096	+		LU632_RS20965	0.41	+0.1
4,005,097	-		LU632_RS20965	0.41	+0.3
4,005,097	-		LU632_RS20965	0.41	-1.0
4,005,097	-		LU632_RS20965	0.41	+0.0
4,005,097	-		LU632_RS20965	0.41	-0.2
4,005,097	-		LU632_RS20965	0.41	-2.5
4,005,098	+		LU632_RS20965	0.41	-0.7
4,005,098	+		LU632_RS20965	0.41	+2.1
4,005,098	+		LU632_RS20965	0.41	-0.3
4,005,099	-		LU632_RS20965	0.41	+1.3
4,005,369	-		LU632_RS20965	0.57	-0.7
4,005,418	-		LU632_RS20965	0.60	-1.5
4,005,479	+		LU632_RS20965	0.64	-2.2
4,005,560	+		LU632_RS20965	0.69	+0.5
4,005,560	+		LU632_RS20965	0.69	+1.0
4,005,560	+		LU632_RS20965	0.69	-0.4
4,005,560	+		LU632_RS20965	0.69	+0.2
4,005,560	+		LU632_RS20965	0.69	+1.3
4,005,560	+		LU632_RS20965	0.69	-0.3
4,005,560	+		LU632_RS20965	0.69	-1.4
4,005,560	+		LU632_RS20965	0.69	-0.6
4,005,560	+		LU632_RS20965	0.69	+0.7
4,005,561	-		LU632_RS20965	0.69	+0.4
4,005,561	-		LU632_RS20965	0.69	+0.1
4,005,564	+		LU632_RS20965	0.69	-0.7
4,005,604	+		LU632_RS20965	0.71	+0.6
4,005,604	+		LU632_RS20965	0.71	+0.6
4,005,707	+		LU632_RS20965	0.78	-0.1
4,005,707	+		LU632_RS20965	0.78	-1.0
4,005,771	+		LU632_RS20965	0.81	+0.0
4,005,771	+		LU632_RS20965	0.81	+1.8
4,005,772	-		LU632_RS20965	0.81	+1.3
4,005,772	-		LU632_RS20965	0.81	-0.7
4,005,772	-		LU632_RS20965	0.81	-1.9
4,005,772	-		LU632_RS20965	0.81	-0.5
4,005,777	+		LU632_RS20965	0.82	-0.9
4,005,870	+		LU632_RS20965	0.87	+1.3
4,005,870	+		LU632_RS20965	0.87	+0.8
4,005,871	-		LU632_RS20965	0.87	-1.2
4,005,883	-		LU632_RS20965	0.88	-0.8
4,005,951	+				-2.6
4,005,952	-				-2.7
4,005,980	+				+0.5
4,005,981	-				-2.4
4,006,016	+				+0.3
4,006,016	+				-0.9
4,006,084	+				+1.3
4,006,195	+				+0.8
4,006,195	+				+1.3
4,006,195	+				+0.6
4,006,195	+				-0.3
4,006,195	+				+1.3
4,006,195	+				-0.6
4,006,195	+				+0.7
4,006,195	+				+0.9
4,006,195	+				-1.0
4,006,196	-				+1.3
4,006,196	-				+2.3
4,006,197	+				+2.0
4,006,336	+		LU632_RS20970	0.10	-0.3
4,006,336	+		LU632_RS20970	0.10	-1.0
4,006,372	+		LU632_RS20970	0.12	-1.1
4,006,426	-		LU632_RS20970	0.14	+1.0
4,006,465	+		LU632_RS20970	0.15	+1.5
4,006,466	-		LU632_RS20970	0.15	+0.7
4,006,920	+		LU632_RS20970	0.33	+0.7
4,007,082	-		LU632_RS20970	0.39	+2.9
4,007,099	-		LU632_RS20970	0.40	+3.9
4,007,099	-		LU632_RS20970	0.40	-1.7
4,007,099	-		LU632_RS20970	0.40	+0.9
4,007,099	-		LU632_RS20970	0.40	+0.4
4,007,104	+		LU632_RS20970	0.40	+0.7
4,007,105	-		LU632_RS20970	0.40	+0.1
4,007,105	-		LU632_RS20970	0.40	-0.8
4,007,105	-		LU632_RS20970	0.40	+2.0
4,007,111	+		LU632_RS20970	0.40	+2.0
4,007,156	+		LU632_RS20970	0.42	-0.3
4,007,157	-		LU632_RS20970	0.42	-0.1
4,007,157	-		LU632_RS20970	0.42	+0.5
4,007,160	+		LU632_RS20970	0.42	-0.7
4,007,161	-		LU632_RS20970	0.42	-0.1
4,007,168	-		LU632_RS20970	0.43	+0.6
4,007,178	-		LU632_RS20970	0.43	+0.8
4,007,205	+		LU632_RS20970	0.44	-2.3
4,007,286	+		LU632_RS20970	0.47	+1.0
4,007,286	+		LU632_RS20970	0.47	+0.2
4,007,287	-		LU632_RS20970	0.47	-0.1
4,007,289	+		LU632_RS20970	0.47	+0.4
4,007,296	+		LU632_RS20970	0.48	+0.6
4,007,382	+		LU632_RS20970	0.51	+0.3
4,007,396	-		LU632_RS20970	0.51	+2.1
4,007,410	-		LU632_RS20970	0.52	-0.8
4,007,591	-		LU632_RS20970	0.59	+1.3
4,007,591	-		LU632_RS20970	0.59	+1.0
4,007,749	-		LU632_RS20970	0.65	+0.7
4,007,749	-		LU632_RS20970	0.65	-1.4
4,007,839	+		LU632_RS20970	0.69	+1.0
4,007,840	-		LU632_RS20970	0.69	-1.0
4,007,886	-		LU632_RS20970	0.71	-1.9
4,007,886	-		LU632_RS20970	0.71	+0.5
4,007,941	+		LU632_RS20970	0.73	+1.5
4,007,952	+		LU632_RS20970	0.73	-0.3
4,007,952	+		LU632_RS20970	0.73	+2.3
4,007,953	-		LU632_RS20970	0.73	+0.0
4,007,958	+		LU632_RS20970	0.73	-1.4
4,008,056	+		LU632_RS20970	0.77	+0.1
4,008,056	+		LU632_RS20970	0.77	+1.3
4,008,056	+		LU632_RS20970	0.77	-0.6
4,008,056	+		LU632_RS20970	0.77	+0.2
4,008,057	-		LU632_RS20970	0.77	+2.5
4,008,057	-		LU632_RS20970	0.77	+1.5
4,008,060	+		LU632_RS20970	0.77	-0.3
4,008,060	+		LU632_RS20970	0.77	-0.3
4,008,060	+		LU632_RS20970	0.77	-0.2
4,008,061	-		LU632_RS20970	0.77	+0.3
4,008,061	-		LU632_RS20970	0.77	+1.0
4,008,097	+		LU632_RS20970	0.79	-1.0
4,008,098	-		LU632_RS20970	0.79	-0.7
4,008,212	+		LU632_RS20970	0.83	+0.8
4,008,212	+		LU632_RS20970	0.83	+3.4
4,008,260	+		LU632_RS20970	0.85	-1.3
4,008,304	+		LU632_RS20970	0.87	-0.2
4,008,306	+		LU632_RS20970	0.87	-0.7
4,008,307	-		LU632_RS20970	0.87	+1.5
4,008,331	+		LU632_RS20970	0.88	-0.1
4,008,331	+		LU632_RS20970	0.88	-0.5
4,008,331	+		LU632_RS20970	0.88	-0.4
4,008,479	-				+1.0
4,008,515	-				+0.2
4,008,535	-				+0.9
4,008,557	-				+1.5
4,008,629	+				+1.5
4,008,630	-				+1.2
4,008,633	+				-0.6
4,008,633	+				-1.0
4,008,706	+				+1.3
4,008,706	+				-3.2
4,008,849	-				-0.9
4,008,851	-				-1.5
4,008,854	+				+2.5
4,008,855	-				+0.1
4,008,886	-				-0.6
4,008,900	+				+0.7
4,008,900	+				+0.1
4,008,915	+				-0.4
4,008,918	+				-1.7
4,008,937	+				-2.6
4,008,957	+				-1.1
4,009,001	-				+1.8
4,009,001	-				+2.6
4,009,001	-				-1.1
4,009,010	-				+0.5
4,009,145	+	nrdD	LU632_RS20975	0.11	-1.0
4,009,146	-	nrdD	LU632_RS20975	0.11	+1.7
4,009,146	-	nrdD	LU632_RS20975	0.11	+1.1
4,009,146	-	nrdD	LU632_RS20975	0.11	+1.3
4,009,210	-	nrdD	LU632_RS20975	0.14	-1.5
4,009,322	+	nrdD	LU632_RS20975	0.19	+1.3
4,009,338	+	nrdD	LU632_RS20975	0.20	-2.3
4,009,338	+	nrdD	LU632_RS20975	0.20	-0.3
4,009,338	+	nrdD	LU632_RS20975	0.20	+0.3
4,009,338	+	nrdD	LU632_RS20975	0.20	-0.2
4,009,339	-	nrdD	LU632_RS20975	0.20	+0.6
4,009,401	-	nrdD	LU632_RS20975	0.23	+2.0
4,009,401	-	nrdD	LU632_RS20975	0.23	+0.5
4,009,558	+	nrdD	LU632_RS20975	0.31	+0.7
4,009,596	+	nrdD	LU632_RS20975	0.32	+0.7
4,009,596	+	nrdD	LU632_RS20975	0.32	-1.0
4,009,597	-	nrdD	LU632_RS20975	0.32	-0.8
4,009,597	-	nrdD	LU632_RS20975	0.32	+1.3
4,009,597	-	nrdD	LU632_RS20975	0.32	-0.7
4,009,597	-	nrdD	LU632_RS20975	0.32	+0.2
4,009,597	-	nrdD	LU632_RS20975	0.32	+0.3
4,009,597	-	nrdD	LU632_RS20975	0.32	+0.4