Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19810

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS19800 and LU632_RS19805 are separated by 203 nucleotidesLU632_RS19805 and LU632_RS19810 are separated by 72 nucleotidesLU632_RS19810 and gmhB are separated by 399 nucleotides LU632_RS19800: LU632_RS19800 - 23S ribosomal RNA, at 3,761,063 to 3,763,965 _RS19800 LU632_RS19805: LU632_RS19805 - tRNA-Glu, at 3,764,169 to 3,764,244 _RS19805 LU632_RS19810: LU632_RS19810 - 16S ribosomal RNA, at 3,764,317 to 3,765,858 _RS19810 LU632_RS19815: gmhB - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 3,766,258 to 3,766,818 gmhB Position (kb) 3764 3765 3766Strain fitness (log2 ratio) -1 0 1 2 3at 3766.358 kb on - strand, within gmhBat 3766.446 kb on + strand, within gmhBat 3766.725 kb on + strand, within gmhBat 3766.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
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3,766,358 - gmhB LU632_RS19815 0.18 -1.6
3,766,446 + gmhB LU632_RS19815 0.34 +3.2
3,766,725 + gmhB LU632_RS19815 0.83 -1.4
3,766,771 + +0.2

Or see this region's nucleotide sequence