Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19005

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
3,586,358	-				-1.1
3,586,451	+				+0.6
3,586,578	+				-1.6
3,586,650	+				-2.8
3,586,654	+				+0.7
3,586,655	-				-1.1
3,586,756	-				-1.1
3,586,756	-				-0.7
3,586,787	-				-1.8
3,586,787	-				+0.5
3,586,840	-				+0.0
3,586,861	-				-0.7
3,586,873	+				+1.2
3,586,874	-				-0.4
3,586,883	+				-0.5
3,587,041	+		LU632_RS19000	0.76	+1.2
3,587,041	+		LU632_RS19000	0.76	+1.0
3,587,064	+		LU632_RS19000	0.87	+0.5
3,587,064	+		LU632_RS19000	0.87	-1.0
3,587,069	-		LU632_RS19000	0.89	-1.0
3,587,069	-		LU632_RS19000	0.89	-1.9
3,587,076	+				+0.4
3,587,236	+				-2.1
3,587,236	+				+1.2
3,587,237	-				-0.2
3,587,302	+				+0.8
3,587,337	-				+0.7
3,587,339	+				-0.1
3,587,340	-				-2.1
3,587,377	+				-2.2
3,587,377	+				-0.2
3,587,395	+				-0.0
3,587,396	-				-1.9
3,587,432	+				-0.3
3,587,433	-				+1.2
3,587,665	-				-0.2
3,587,733	+		LU632_RS19005	0.12	-1.9
3,587,776	-		LU632_RS19005	0.14	-1.1
3,587,809	-		LU632_RS19005	0.15	-1.2
3,587,819	+		LU632_RS19005	0.15	-1.4
3,587,838	+		LU632_RS19005	0.16	-1.7
3,587,944	-		LU632_RS19005	0.19	-2.5
3,587,960	+		LU632_RS19005	0.20	-0.4
3,587,960	+		LU632_RS19005	0.20	+0.1
3,587,960	+		LU632_RS19005	0.20	-0.6
3,587,960	+		LU632_RS19005	0.20	-0.7
3,587,961	-		LU632_RS19005	0.20	+0.2
3,587,961	-		LU632_RS19005	0.20	-0.0
3,588,061	-		LU632_RS19005	0.23	-2.9
3,588,066	-		LU632_RS19005	0.23	+1.4
3,588,134	-		LU632_RS19005	0.25	+2.1
3,588,155	+		LU632_RS19005	0.26	-0.5
3,588,155	+		LU632_RS19005	0.26	+0.3
3,588,156	-		LU632_RS19005	0.26	+1.8
3,588,156	-		LU632_RS19005	0.26	-0.0
3,588,157	+		LU632_RS19005	0.26	+0.3
3,588,158	-		LU632_RS19005	0.26	-0.3
3,588,291	-		LU632_RS19005	0.30	+0.4
3,588,503	+		LU632_RS19005	0.37	+0.4
3,588,509	+		LU632_RS19005	0.37	-0.8
3,588,509	+		LU632_RS19005	0.37	+0.8
3,588,509	+		LU632_RS19005	0.37	+1.2
3,588,531	+		LU632_RS19005	0.38	-0.4
3,588,579	+		LU632_RS19005	0.40	-1.4
3,588,579	+		LU632_RS19005	0.40	-0.8
3,588,580	-		LU632_RS19005	0.40	+0.6
3,588,580	-		LU632_RS19005	0.40	-2.6
3,588,580	-		LU632_RS19005	0.40	-0.4
3,588,580	-		LU632_RS19005	0.40	+0.4
3,588,580	-		LU632_RS19005	0.40	-3.1
3,588,656	+		LU632_RS19005	0.42	+0.5
3,588,656	+		LU632_RS19005	0.42	-2.7
3,588,716	+		LU632_RS19005	0.44	-1.1
3,588,716	+		LU632_RS19005	0.44	-1.1
3,588,717	-		LU632_RS19005	0.44	-0.4
3,588,772	-		LU632_RS19005	0.46	+0.2
3,588,851	+		LU632_RS19005	0.49	-0.2
3,588,852	-		LU632_RS19005	0.49	+1.2
3,588,865	-		LU632_RS19005	0.49	+1.4
3,588,917	+		LU632_RS19005	0.51	-0.9
3,588,969	+		LU632_RS19005	0.52	+0.4
3,589,011	+		LU632_RS19005	0.54	-1.4
3,589,140	-		LU632_RS19005	0.58	-2.5
3,589,164	-		LU632_RS19005	0.59	-0.6
3,589,267	+		LU632_RS19005	0.62	+2.2
3,589,267	+		LU632_RS19005	0.62	-0.4
3,589,290	+		LU632_RS19005	0.63	-0.4
3,589,290	+		LU632_RS19005	0.63	-0.8
3,589,290	-		LU632_RS19005	0.63	-1.1
3,589,581	-		LU632_RS19005	0.72	+0.4
3,589,600	+		LU632_RS19005	0.73	+1.2
3,589,600	+		LU632_RS19005	0.73	+2.1
3,589,600	+		LU632_RS19005	0.73	+2.2
3,589,601	-		LU632_RS19005	0.73	-0.4
3,589,601	-		LU632_RS19005	0.73	-0.0
3,589,604	+		LU632_RS19005	0.73	-2.0
3,589,604	+		LU632_RS19005	0.73	-0.4
3,589,604	+		LU632_RS19005	0.73	+0.5
3,589,641	-		LU632_RS19005	0.74	+1.2
3,589,676	+		LU632_RS19005	0.75	+0.2
3,589,688	-		LU632_RS19005	0.76	+1.9
3,589,836	+		LU632_RS19005	0.81	-0.1
3,589,837	-		LU632_RS19005	0.81	-0.7
3,589,840	-		LU632_RS19005	0.81	+2.4
3,589,876	+		LU632_RS19005	0.82	-0.6
3,589,934	+		LU632_RS19005	0.84	-2.4
3,590,011	+		LU632_RS19005	0.86	+2.2
3,590,012	-		LU632_RS19005	0.86	+0.3
3,590,012	-		LU632_RS19005	0.86	-1.2
3,590,012	-		LU632_RS19005	0.86	+1.2
3,590,138	+				+1.2
3,590,145	+				-0.1
3,590,146	-				+0.0
3,590,146	-				-1.3
3,590,244	+				-1.4
3,590,330	+				+1.2
3,590,331	-				-0.5
3,590,390	+				+0.9
3,590,430	+				-1.3
3,590,478	-				+0.5
3,590,499	+				-1.8
3,590,500	-				+0.5
3,590,616	+		LU632_RS19010	0.48	-0.4
3,590,627	-		LU632_RS19010	0.53	+0.2
3,590,670	+		LU632_RS19010	0.73	+1.5
3,590,728	-				+0.0
3,590,798	+				-0.6
3,590,983	+	cspA	LU632_RS19015	0.87	+1.2
3,590,984	-	cspA	LU632_RS19015	0.88	+1.5
3,591,030	-				-3.6
3,591,074	-				-0.6
3,591,085	-				-1.6
3,591,119	-				-0.6
3,591,160	-				+0.9
3,591,212	+				+0.1
3,591,212	+				-0.3
3,591,225	+				+0.2
3,591,242	-				-0.5
3,591,248	+				-0.8
3,591,257	-				+1.2
3,591,257	-				+0.2
3,591,269	-				-2.3
3,591,295	+				-1.6
3,591,295	+				-0.6
3,591,296	-				-0.0
3,591,345	+				-1.8
3,591,345	-				+0.2